Paranahewage S Shanaka, Gierhart Cassidy S, Fennell Christopher J
Department of Chemistry, Oklahoma State University, Stillwater, OK, 74078, USA.
Department of Chemical Engineering, Oklahoma State University, Stillwater, OK, 74078, USA.
J Comput Aided Mol Des. 2016 Nov;30(11):1059-1065. doi: 10.1007/s10822-016-9950-z. Epub 2016 Aug 29.
Alchemical transformation of solutes using classical fixed-charge force fields is a popular strategy for assessing the free energy of transfer in different environments. Accurate estimations of transfer between phases with significantly different polarities can be difficult because of the static nature of the force fields. Here, we report on an application of such calculations in the SAMPL5 experiment that also involves an effort in balancing solute and solvent interactions via their expected static dielectric constants. This strategy performs well with respect to predictive accuracy and correlation with unknown experimental values. We follow this by performing a series of retrospective investigations which highlight the potential importance of proper balancing in these systems, and we use a null hypothesis analysis to explore potential biases in the comparisons with experiment. The collective findings indicate that considerations of force field compatibility through dielectric behavior is a potential strategy for future improvements in transfer processes between disparate environments.
使用经典固定电荷力场对溶质进行炼金术转化是评估不同环境中转移自由能的常用策略。由于力场的静态性质,准确估计极性差异显著的相之间的转移可能会很困难。在这里,我们报告了此类计算在SAMPL5实验中的应用,该实验还涉及通过溶质和溶剂的预期静态介电常数来平衡它们之间相互作用的工作。该策略在预测准确性以及与未知实验值的相关性方面表现良好。在此之后,我们进行了一系列回顾性研究,突出了这些系统中适当平衡的潜在重要性,并使用零假设分析来探索与实验比较中的潜在偏差。总体研究结果表明,通过介电行为考虑力场兼容性是未来改进不同环境之间转移过程的潜在策略。