Suppr超能文献

用于非水凝聚相建模的CM5电荷评估。

Evaluation of CM5 Charges for Nonaqueous Condensed-Phase Modeling.

作者信息

Dodda Leela S, Vilseck Jonah Z, Cutrona Kara J, Jorgensen William L

机构信息

Department of Chemistry, Yale University , New Haven, Connecticut 06520-8107, United States.

出版信息

J Chem Theory Comput. 2015 Sep 8;11(9):4273-82. doi: 10.1021/acs.jctc.5b00414. Epub 2015 Aug 27.

Abstract

Partial atomic charges for neutral molecules from quantum mechanical calculations are typically scaled for use in molecular modeling of liquid-phase systems. Optimal scale factors of 1.14 for CM1A and 1.27 for CM5 charges were previously determined for minimizing errors in free energies of hydration. The adequacy of the 1.14CM1A and 1.27CM5 models are evaluated here in pure liquid simulations in combination with the OPLS-AA force field. For 22 organic liquids, the 1.14CM1A and 1.27CM5 models yield mean unsigned errors (MUEs) of ca. 1.40 kcal/mol for heats of vaporization. Not surprisingly, this reflects overpolarization with the scale factors derived for aqueous media. Prediction of pure liquid properties using CM5 charges is optimized using a scale factor of 1.14, which reduces the MUE for heats of vaporization to 0.89 kcal/mol. However, due to the impracticality of using different scale factors in different explicit-solvent condensed-phase simulations, a universal scale factor of 1.20 emerged for CM5 charges. This provides a balance between errors in computed pure liquid properties and free energies of hydration. Computation of free energies of hydration by the GB/SA method further found that 1.20 is equally suited for use in explicit or implicit treatments of aqueous solvation. With 1.20*CM5 charges, a variety of condensed-phase simulations can be pursued while maintaining average errors of 1.0 kcal/mol in key thermodynamic properties.

摘要

量子力学计算得出的中性分子的部分原子电荷通常会进行缩放,以便用于液相系统的分子建模。先前已确定CM1A电荷的最佳缩放因子为1.14,CM5电荷的最佳缩放因子为1.27,以最小化水合自由能的误差。本文结合OPLS-AA力场,在纯液体模拟中评估了1.14CM1A和1.27CM5模型的适用性。对于22种有机液体,1.14CM1A和1.27CM5模型的汽化热平均绝对误差(MUEs)约为1.40 kcal/mol。不出所料,这反映了使用为水性介质推导的缩放因子导致的过度极化。使用CM5电荷预测纯液体性质时,使用1.14的缩放因子进行了优化,这将汽化热的MUE降低到了0.89 kcal/mol。然而,由于在不同的显式溶剂凝聚相模拟中使用不同缩放因子不切实际,因此出现了CM5电荷的通用缩放因子1.20。这在计算的纯液体性质误差和水合自由能之间取得了平衡。通过GB/SA方法计算水合自由能进一步发现,1.20同样适用于水性溶剂化的显式或隐式处理。使用1.20*CM5电荷,可以进行各种凝聚相模拟,同时关键热力学性质的平均误差保持在1.0 kcal/mol。

相似文献

1
Evaluation of CM5 Charges for Nonaqueous Condensed-Phase Modeling.用于非水凝聚相建模的CM5电荷评估。
J Chem Theory Comput. 2015 Sep 8;11(9):4273-82. doi: 10.1021/acs.jctc.5b00414. Epub 2015 Aug 27.
3
Evaluation of CM5 Charges for Condensed-Phase Modeling.用于凝聚相建模的CM5电荷评估。
J Chem Theory Comput. 2014 Jul 8;10(7):2802-2812. doi: 10.1021/ct500016d. Epub 2014 Apr 1.
7
OPLS/2020 Force Field for Unsaturated Hydrocarbons, Alcohols, and Ethers.用于不饱和烃、醇类和醚类的OPLS/2020力场
J Phys Chem B. 2024 Jan 11;128(1):250-262. doi: 10.1021/acs.jpcb.3c06602. Epub 2023 Dec 21.
8
Hydration Free Energies of Multifunctional Nitroaromatic Compounds.多功能硝基芳香化合物的水合自由能
J Chem Theory Comput. 2013 Jun 11;9(6):2774-85. doi: 10.1021/ct3011002. Epub 2013 Jun 3.

引用本文的文献

2
What is the Optimal Dipole Moment for Nonpolarizable Models of Liquids?液体的非极化模型的最优偶极矩是多少?
J Chem Theory Comput. 2023 Mar 28;19(6):1790-1804. doi: 10.1021/acs.jctc.2c01123. Epub 2023 Feb 24.
4
Q-Force: Quantum Mechanically Augmented Molecular Force Fields.Q-Force:量子力学增强分子力场。
J Chem Theory Comput. 2021 Aug 10;17(8):4946-4960. doi: 10.1021/acs.jctc.1c00195. Epub 2021 Jul 12.

本文引用的文献

1
Charge Model 4 and Intramolecular Charge Polarization.电荷模型4与分子内电荷极化
J Chem Theory Comput. 2007 Nov;3(6):2046-54. doi: 10.1021/ct7001607.
5
Charge Anisotropy: Where Atomic Multipoles Matter Most.电荷各向异性:原子多极矩最为重要之处。
J Chem Theory Comput. 2014 Oct 14;10(10):4488-96. doi: 10.1021/ct5005565. Epub 2014 Sep 30.
7
Determination of partial molar volumes from free energy perturbation theory.基于自由能微扰理论测定偏摩尔体积
Phys Chem Chem Phys. 2015 Apr 7;17(13):8407-15. doi: 10.1039/c4cp05304d. Epub 2015 Jan 15.
8
Evaluation of CM5 Charges for Condensed-Phase Modeling.用于凝聚相建模的CM5电荷评估。
J Chem Theory Comput. 2014 Jul 8;10(7):2802-2812. doi: 10.1021/ct500016d. Epub 2014 Apr 1.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验