Stenkova Anna M, Bystritskaya Evgeniya P, Guzev Konstantin V, Rakin Alexander V, Isaeva Marina P
Far Eastern Federal University, Vladivostok, Russia.; Pacific Institute of Bioorganic Chemistry, Vladivostok, Russia.
Pacific Institute of Bioorganic Chemistry, Vladivostok, Russia.
Evol Bioinform Online. 2016 Aug 21;12:185-91. doi: 10.4137/EBO.S40346. eCollection 2016.
The genus Yersinia includes species with a wide range of eukaryotic hosts (from fish, insects, and plants to mammals and humans). One of the major outer membrane proteins, the porin OmpC, is preferentially expressed in the host gut, where osmotic pressure, temperature, and the concentrations of nutrients and toxic products are relatively high. We consider here the molecular evolution and phylogeny of Yersinia ompC. The maximum likelihood gene tree reflects the macroevolution processes occurring within the genus Yersinia. Positive selection and horizontal gene transfer are the key factors of ompC diversification, and intraspecies recombination was revealed in two Yersinia species. The impact of recombination on ompC evolution was different from that of another major porin gene, ompF, possibly due to the emergence of additional functions and conservation of the basic transport function. The predicted antigenic determinants of OmpC were located in rapidly evolving regions, which may indicate the evolutionary mechanisms of Yersinia adaptation to the host immune system.
耶尔森氏菌属包括一系列具有广泛真核宿主的物种(从鱼类、昆虫、植物到哺乳动物和人类)。主要外膜蛋白之一,孔蛋白OmpC,优先在宿主肠道中表达,在那里渗透压、温度以及营养物质和有毒产物的浓度相对较高。我们在此考虑耶尔森氏菌ompC的分子进化和系统发育。最大似然基因树反映了耶尔森氏菌属内发生的宏观进化过程。正选择和水平基因转移是ompC多样化的关键因素,并且在两种耶尔森氏菌中发现了种内重组。重组对ompC进化的影响与另一个主要孔蛋白基因ompF不同,这可能是由于额外功能的出现和基本转运功能的保守性。预测的OmpC抗原决定簇位于快速进化的区域,这可能表明耶尔森氏菌适应宿主免疫系统的进化机制。