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鉴定和功能表征慢性髓性白血病谱系阴性细胞中的 miRNA-基因调控网络。

Identification and functional characterization of the miRNA-gene regulatory network in chronic myeloid leukemia lineage negative cells.

机构信息

Institute of Life Sciences, Nalco Square, Bhubaneswar, Odisha, India.

Department of Clinical Haematology, SCB Medical College, Cuttack, Odisha, India.

出版信息

Sci Rep. 2016 Sep 2;6:32493. doi: 10.1038/srep32493.

DOI:10.1038/srep32493
PMID:27586591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5009428/
Abstract

Chronic myeloid leukemia (CML) is maintained by leukemic stem cells (LSCs) which are resistant to the existing TKI therapy. Hence a better understanding of the CML LSCs is necessary to eradicate these cells and achieve complete cure. Using the miRNA-gene interaction networks from the CML lin(-) cells we identified a set of up/down-regulated miRNAs and corresponding target genes. Association studies (Pearson correlation) from the miRNA and gene expression data showed that miR-1469 and miR-1972 have significantly higher number of target genes, 75 and 50 respectively. We observed that miR-1972 induces G2-M cell cycle arrest and miR-1469 moderately arrested G1 cell cycle when overexpressed in KCL22 cells. We have earlier shown that a combination of imatinib and JAK inhibitor I can significantly bring down the proliferation of CML lineage negative cells. Here we observed that imatinib and JAK inhibitor I combination restored the expression pattern of the down-regulated miRNAs in primary CML lin(-) cells. Thus effective manipulation of the deregulated miRNAs can restore the miRNA-mRNA networks that can efficiently inhibit CML stem and progenitor cells and alleviate the disease.

摘要

慢性髓性白血病(CML)由白血病干细胞(LSCs)维持,这些细胞对现有的 TKI 治疗具有抗性。因此,需要更好地了解 CML LSCs,以消灭这些细胞并实现完全治愈。我们使用来自 CML lin(-)细胞的 miRNA-基因相互作用网络,鉴定了一组上调/下调的 miRNA 和相应的靶基因。miRNA 和基因表达数据的关联研究(Pearson 相关性)表明,miR-1469 和 miR-1972 分别具有显著更多的靶基因,分别为 75 和 50 个。我们观察到,当在 KCL22 细胞中过表达时,miR-1972 诱导 G2-M 细胞周期停滞,而 miR-1469 适度地停滞 G1 细胞周期。我们之前已经表明,伊马替尼和 JAK 抑制剂 I 的组合可以显著降低 CML 谱系阴性细胞的增殖。在这里,我们观察到伊马替尼和 JAK 抑制剂 I 的组合恢复了原发性 CML lin(-)细胞中下调的 miRNA 的表达模式。因此,有效操纵失调的 miRNA 可以恢复 miRNA-mRNA 网络,有效地抑制 CML 干细胞和祖细胞,并减轻疾病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/cf08b3670412/srep32493-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/13c743c2e1d8/srep32493-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/cf2284482983/srep32493-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/40de39319958/srep32493-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/b3091287fb03/srep32493-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/3ee4dc7b438c/srep32493-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/cf08b3670412/srep32493-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/13c743c2e1d8/srep32493-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/cf2284482983/srep32493-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/40de39319958/srep32493-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/b3091287fb03/srep32493-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/3ee4dc7b438c/srep32493-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8728/5009428/cf08b3670412/srep32493-f6.jpg

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