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单核苷酸多态性分析与全外显子组测序:它们在一个分离遗传性共济失调的近亲家系分析中的应用

SNP Analysis and Whole Exome Sequencing: Their Application in the Analysis of a Consanguineous Pedigree Segregating Ataxia.

作者信息

Nickerson Sarah L, Marquis-Nicholson Renate, Claxton Karen, Ashton Fern, Leong Ivone U S, Prosser Debra O, Love Jennifer M, George Alice M, Taylor Graham, Wilson Callum, Gardner R J McKinlay, Love Donald R

机构信息

Diagnostic Genetics, LabPLUS, Auckland City Hospital, P.O. Box 110031, Auckland 1148, New Zealand.

Centre for Translational Pathology, University of Melbourne, Corner Grattan Street and Royal Parade, Parkville, Victoria 3010, Australia.

出版信息

Microarrays (Basel). 2015 Oct 23;4(4):490-502. doi: 10.3390/microarrays4040490.

DOI:10.3390/microarrays4040490
PMID:27600236
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4996410/
Abstract

Autosomal recessive cerebellar ataxia encompasses a large and heterogeneous group of neurodegenerative disorders. We employed single nucleotide polymorphism (SNP) analysis and whole exome sequencing to investigate a consanguineous Maori pedigree segregating ataxia. We identified a novel mutation in exon 10 of the SACS gene: c.7962T>G p.(Tyr2654*), establishing the diagnosis of autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS). Our findings expand both the genetic and phenotypic spectrum of this rare disorder, and highlight the value of high-density SNP analysis and whole exome sequencing as powerful and cost-effective tools in the diagnosis of genetically heterogeneous disorders such as the hereditary ataxias.

摘要

常染色体隐性遗传性小脑共济失调涵盖了一大类异质性神经退行性疾病。我们采用单核苷酸多态性(SNP)分析和全外显子组测序来研究一个患有共济失调的近亲毛利人家系。我们在SACS基因第10外显子中发现了一个新的突变:c.7962T>G p.(Tyr2654*),从而确诊为夏尔沃-萨格奈常染色体隐性遗传性痉挛性共济失调(ARSACS)。我们的研究结果扩展了这种罕见疾病的遗传和表型谱,并突出了高密度SNP分析和全外显子组测序作为强大且经济高效的工具在诊断遗传性共济失调等遗传异质性疾病中的价值。

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SNP Analysis and Whole Exome Sequencing: Their Application in the Analysis of a Consanguineous Pedigree Segregating Ataxia.单核苷酸多态性分析与全外显子组测序:它们在一个分离遗传性共济失调的近亲家系分析中的应用
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本文引用的文献

1
Molecular and clinical study of a cohort of 110 Algerian patients with autosomal recessive ataxia.对110名患有常染色体隐性共济失调的阿尔及利亚患者进行的分子与临床研究。
BMC Med Genet. 2015 Jun 12;16:36. doi: 10.1186/s12881-015-0180-3.
2
Sacs knockout mice present pathophysiological defects underlying autosomal recessive spastic ataxia of Charlevoix-Saguenay.Sacs基因敲除小鼠表现出夏尔沃-萨格奈常染色体隐性痉挛性共济失调潜在的病理生理缺陷。
Hum Mol Genet. 2015 Feb 1;24(3):727-39. doi: 10.1093/hmg/ddu491. Epub 2014 Sep 26.
3
Cerebellum and neuropsychiatric disorders: insights from ARSACS.
全外显子组测序鉴定的一种新型纯合 SACS 突变——所有已发表病例的基因型表型相关性。
J Mol Neurosci. 2020 Jan;70(1):131-141. doi: 10.1007/s12031-019-01410-z. Epub 2019 Nov 7.
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Spinocerebellar Ataxia type 29 in a family of Māori descent.毛利人后裔家族中的29型脊髓小脑共济失调。
Cerebellum Ataxias. 2019 Oct 12;6:14. doi: 10.1186/s40673-019-0108-3. eCollection 2019.
5
SNP Arrays.单核苷酸多态性阵列
Microarrays (Basel). 2016 Oct 25;5(4):27. doi: 10.3390/microarrays5040027.
小脑与神经精神障碍:来自 ARSACS 的见解。
Neurol Sci. 2014 Jan;35(1):95-7. doi: 10.1007/s10072-013-1592-5. Epub 2013 Dec 7.
4
Novel SACS mutations identified by whole exome sequencing in a norwegian family with autosomal recessive spastic ataxia of Charlevoix-Saguenay.通过全外显子组测序在一个具有常染色体隐性痉挛性共济失调的挪威家族中鉴定出新的 SACS 突变。
PLoS One. 2013 Jun 13;8(6):e66145. doi: 10.1371/journal.pone.0066145. Print 2013.
5
A novel glycine decarboxylase gene mutation in an Indian family with nonketotic hyperglycinemia.一个患有非酮症高甘氨酸血症的印度家庭中的新型甘氨酸脱羧酶基因突变。
J Child Neurol. 2014 Jan;29(1):122-7. doi: 10.1177/0883073812471432. Epub 2013 Jan 24.
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Cerebellar cognitive affective syndrome and autosomal recessive spastic ataxia of charlevoix-saguenay: a report of two male sibs.小脑认知情感综合征和查尔沃伊-萨格奈常染色体隐性痉挛性共济失调:两例男性同胞的报告。
Psychopathology. 2012;45(3):193-9. doi: 10.1159/000331319. Epub 2012 Mar 22.
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The autosomal recessive cerebellar ataxias.常染色体隐性遗传性小脑共济失调
N Engl J Med. 2012 Feb 16;366(7):636-46. doi: 10.1056/NEJMra1006610.
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Exome sequencing: a transformative technology.外显子组测序:一项变革性技术。
Lancet Neurol. 2011 Oct;10(10):942-6. doi: 10.1016/S1474-4422(11)70196-X.
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Mutations in SACS cause atypical and late-onset forms of ARSACS.SACS 基因突变可导致非典型和迟发性 ARSACS。
Neurology. 2010 Sep 28;75(13):1181-8. doi: 10.1212/WNL.0b013e3181f4d86c.
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Molecular diagnosis of known recessive ataxias by homozygosity mapping with SNP arrays.利用 SNP 芯片进行纯合性作图对已知的隐性共济失调进行分子诊断。
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