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抗生素环境下的时空微生物进化

Spatiotemporal microbial evolution on antibiotic landscapes.

作者信息

Baym Michael, Lieberman Tami D, Kelsic Eric D, Chait Remy, Gross Rotem, Yelin Idan, Kishony Roy

机构信息

Department of Systems Biology, Harvard Medical School, Boston, MA, USA.

Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.

出版信息

Science. 2016 Sep 9;353(6304):1147-51. doi: 10.1126/science.aag0822.

Abstract

A key aspect of bacterial survival is the ability to evolve while migrating across spatially varying environmental challenges. Laboratory experiments, however, often study evolution in well-mixed systems. Here, we introduce an experimental device, the microbial evolution and growth arena (MEGA)-plate, in which bacteria spread and evolved on a large antibiotic landscape (120 × 60 centimeters) that allowed visual observation of mutation and selection in a migrating bacterial front. While resistance increased consistently, multiple coexisting lineages diversified both phenotypically and genotypically. Analyzing mutants at and behind the propagating front, we found that evolution is not always led by the most resistant mutants; highly resistant mutants may be trapped behind more sensitive lineages. The MEGA-plate provides a versatile platform for studying microbial adaption and directly visualizing evolutionary dynamics.

摘要

细菌生存的一个关键方面是在跨越空间变化的环境挑战时进行进化的能力。然而,实验室实验通常研究的是充分混合系统中的进化。在这里,我们引入了一种实验装置——微生物进化与生长平台(MEGA-平板),细菌在一个大型抗生素环境(120×60厘米)中扩散并进化,这使得我们能够直观地观察迁移细菌前沿的突变和选择。虽然耐药性持续增加,但多个共存的谱系在表型和基因型上都出现了分化。通过分析传播前沿及其后方的突变体,我们发现进化并不总是由耐药性最强的突变体主导;高耐药性突变体可能被困在更敏感的谱系之后。MEGA-平板为研究微生物适应性和直接可视化进化动态提供了一个通用平台。

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