Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Institute for Protein Design, University of Washington, Seattle, Washington 98195, USA.
Nature. 2016 Sep 15;537(7620):320-7. doi: 10.1038/nature19946.
There are 20(200) possible amino-acid sequences for a 200-residue protein, of which the natural evolutionary process has sampled only an infinitesimal subset. De novo protein design explores the full sequence space, guided by the physical principles that underlie protein folding. Computational methodology has advanced to the point that a wide range of structures can be designed from scratch with atomic-level accuracy. Almost all protein engineering so far has involved the modification of naturally occurring proteins; it should now be possible to design new functional proteins from the ground up to tackle current challenges in biomedicine and nanotechnology.
对于一个由 200 个残基组成的 200 种可能的氨基酸序列的蛋白质,自然进化过程只对其中一个无限小的子集进行了采样。从头蛋白质设计探索了完整的序列空间,由蛋白质折叠所依据的物理原理来指导。计算方法已经发展到可以从原子水平的精度从头设计出广泛的结构。到目前为止,几乎所有的蛋白质工程都涉及对天然存在的蛋白质的修饰;现在应该有可能从头开始设计新的功能蛋白质,以解决生物医学和纳米技术领域当前的挑战。