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波罗的海兰索特深海海底以下微生物细胞的大小和碳含量

Size and Carbon Content of Sub-seafloor Microbial Cells at Landsort Deep, Baltic Sea.

作者信息

Braun Stefan, Morono Yuki, Littmann Sten, Kuypers Marcel, Aslan Hüsnü, Dong Mingdong, Jørgensen Bo B, Lomstein Bente Aa

机构信息

Center for Geomicrobiology, Department of Bioscience, Aarhus University Aarhus, Denmark.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology Kochi, Japan.

出版信息

Front Microbiol. 2016 Aug 31;7:1375. doi: 10.3389/fmicb.2016.01375. eCollection 2016.

Abstract

The discovery of a microbial ecosystem in ocean sediments has evoked interest in life under extreme energy limitation and its role in global element cycling. However, fundamental parameters such as the size and the amount of biomass of sub-seafloor microbial cells are poorly constrained. Here we determined the volume and the carbon content of microbial cells from a marine sediment drill core retrieved by the Integrated Ocean Drilling Program (IODP), Expedition 347, at Landsort Deep, Baltic Sea. To determine their shape and volume, cells were separated from the sediment matrix by multi-layer density centrifugation and visualized via epifluorescence microscopy (FM) and scanning electron microscopy (SEM). Total cell-carbon was calculated from amino acid-carbon, which was analyzed by high-performance liquid chromatography (HPLC) after cells had been purified by fluorescence-activated cell sorting (FACS). The majority of microbial cells in the sediment have coccoid or slightly elongated morphology. From the sediment surface to the deepest investigated sample (~60 m below the seafloor), the cell volume of both coccoid and elongated cells decreased by an order of magnitude from ~0.05 to 0.005 μm(3). The cell-specific carbon content was 19-31 fg C cell(-1), which is at the lower end of previous estimates that were used for global estimates of microbial biomass. The cell-specific carbon density increased with sediment depth from about 200 to 1000 fg C μm(-3), suggesting that cells decrease their water content and grow small cell sizes as adaptation to the long-term subsistence at very low energy availability in the deep biosphere. We present for the first time depth-related data on the cell volume and carbon content of sedimentary microbial cells buried down to 60 m below the seafloor. Our data enable estimates of volume- and biomass-specific cellular rates of energy metabolism in the deep biosphere and will improve global estimates of microbial biomass.

摘要

海洋沉积物中微生物生态系统的发现引发了人们对极端能量限制条件下生命及其在全球元素循环中作用的兴趣。然而,诸如海底以下微生物细胞的大小和生物量等基本参数却知之甚少。在此,我们测定了通过综合大洋钻探计划(IODP)第347航次在波罗的海兰索特海渊获取的海洋沉积物岩芯中微生物细胞的体积和碳含量。为了确定细胞的形状和体积,通过多层密度离心将细胞从沉积物基质中分离出来,并通过落射荧光显微镜(FM)和扫描电子显微镜(SEM)进行观察。在通过荧光激活细胞分选(FACS)纯化细胞后,利用高效液相色谱(HPLC)分析氨基酸碳,进而计算总细胞碳含量。沉积物中的大多数微生物细胞呈球状或略呈拉长状。从沉积物表面到最深研究样本(海底以下约60米),球状和拉长状细胞的体积均下降了一个数量级,从约0.05立方微米降至0.005立方微米。细胞特异性碳含量为19 - 31 fg C cell⁻¹,处于先前用于全球微生物生物量估算的较低水平。细胞特异性碳密度随沉积物深度从约200 fg C μm⁻³增加到1000 fg C μm⁻³,这表明细胞减少其含水量并长成较小的细胞尺寸,以适应深层生物圈极低能量供应下的长期生存。我们首次展示了海底以下60米深处沉积微生物细胞的体积和碳含量与深度相关的数据。我们的数据有助于估算深层生物圈中能量代谢的体积特异性和生物量特异性细胞速率,并将改进全球微生物生物量的估算。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3d1/5005352/9966434cb300/fmicb-07-01375-g0001.jpg

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