肠炎沙门氏菌亚种肠炎血清型巴尔多菌株CRJJGF_00099（γ-变形菌门）的基因组序列草图
Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria).
作者信息
Gupta Sushim K, McMillan Elizabeth A, Jackson Charlene R, Desai Prerak T, Porwollik Steffen, McClelland Michael, Hiott Lari M, Humayoun Shaheen B, Frye Jonathan G
机构信息
Bacterial Epidemiology and Antimicrobial Resistance Research Unit, USDA-ARS, Athens, Georgia, USA.
Bacterial Epidemiology and Antimicrobial Resistance Research Unit, USDA-ARS, Athens, Georgia, USA Department of Microbiology, University of Georgia, Athens, Georgia, USA.
出版信息
Genome Announc. 2016 Sep 15;4(5):e00964-16. doi: 10.1128/genomeA.00964-16.
Abstract
Here, we report a 4.87-Mbp draft genome sequence of the multidrug-resistant (MDR) Salmonella enterica subsp. enterica serovar Bardo strain CRJJGF_00099, isolated from dairy cattle in 2005.
摘要
在此，我们报告了一株多药耐药性（MDR）肠炎沙门氏菌亚种肠炎血清型巴尔多菌株CRJJGF_00099的487万碱基对草图基因组序列，该菌株于2005年从奶牛中分离得到。
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Antimicrob Agents Chemother. 2014;58(1):212-20. doi: 10.1128/AAC.01310-13. Epub 2013 Oct 21.
3
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