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本文引用的文献

1
Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.通过核糖体足迹分析推断出的人类数千个新的翻译开放阅读框。
Elife. 2016 May 27;5:e13328. doi: 10.7554/eLife.13328.
2
Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish.在小鼠、人类和斑马鱼中保持 uORF 的抑制性和序列特征。
Nat Commun. 2016 May 24;7:11663. doi: 10.1038/ncomms11663.
3
DHX29 reduces leaky scanning through an upstream AUG codon regardless of its nucleotide context.无论其核苷酸上下文如何,DHX29均可减少通过上游AUG密码子的渗漏扫描。
Nucleic Acids Res. 2016 May 19;44(9):4252-65. doi: 10.1093/nar/gkw240. Epub 2016 Apr 11.
4
Ribosome Footprint Profiling of Translation throughout the Genome.全基因组翻译过程中的核糖体足迹分析
Cell. 2016 Mar 24;165(1):22-33. doi: 10.1016/j.cell.2016.02.066.
5
Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides.小开放阅读框编码多肽的改进鉴定与分析
Anal Chem. 2016 Apr 5;88(7):3967-75. doi: 10.1021/acs.analchem.6b00191. Epub 2016 Mar 24.
6
Upstream ORFs are prevalent translational repressors in vertebrates.上游开放阅读框是脊椎动物中普遍存在的翻译抑制因子。
EMBO J. 2016 Apr 1;35(7):706-23. doi: 10.15252/embj.201592759. Epub 2016 Feb 19.
7
Translation from the 5' untranslated region shapes the integrated stress response.来自5'非翻译区的翻译塑造了整合应激反应。
Science. 2016 Jan 29;351(6272):aad3867. doi: 10.1126/science.aad3867.
8
In-depth analysis of cis-determinants that either promote or inhibit reinitiation on GCN4 mRNA after translation of its four short uORFs.对顺式作用元件的深入分析,这些元件在GCN4 mRNA的四个短上游开放阅读框翻译后,要么促进要么抑制其重新起始翻译。
RNA. 2016 Apr;22(4):542-58. doi: 10.1261/rna.055046.115. Epub 2016 Jan 28.
9
A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle.一种由注释为长链非编码RNA的转录本编码的肽可增强肌肉中的肌浆网钙ATP酶活性。
Science. 2016 Jan 15;351(6270):271-5. doi: 10.1126/science.aad4076.
10
Tunable protein synthesis by transcript isoforms in human cells.人类细胞中通过转录本异构体实现的可调蛋白合成。
Elife. 2016 Jan 6;5:e10921. doi: 10.7554/eLife.10921.

解码短开放阅读框翻译——从小蛋白到基因调控

Decoding sORF translation - from small proteins to gene regulation.

作者信息

Cabrera-Quio Luis Enrique, Herberg Sarah, Pauli Andrea

机构信息

a The Research Institute of Molecular Pathology, Vienna Biocenter (VBC) , Vienna , Austria.

出版信息

RNA Biol. 2016 Nov;13(11):1051-1059. doi: 10.1080/15476286.2016.1218589. Epub 2016 Aug 12.

DOI:10.1080/15476286.2016.1218589
PMID:27653973
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5100344/
Abstract

Translation is best known as the fundamental mechanism by which the ribosome converts a sequence of nucleotides into a string of amino acids. Extensive research over many years has elucidated the key principles of translation, and the majority of translated regions were thought to be known. The recent discovery of wide-spread translation outside of annotated protein-coding open reading frames (ORFs) came therefore as a surprise, raising the intriguing possibility that these newly discovered translated regions might have unrecognized protein-coding or gene-regulatory functions. Here, we highlight recent findings that provide evidence that some of these newly discovered translated short ORFs (sORFs) encode functional, previously missed small proteins, while others have regulatory roles. Based on known examples we will also speculate about putative additional roles and the potentially much wider impact that these translated regions might have on cellular homeostasis and gene regulation.

摘要

翻译最为人所知的是核糖体将核苷酸序列转化为氨基酸链的基本机制。多年来的广泛研究阐明了翻译的关键原理,并且大多数翻译区域被认为是已知的。因此,最近在注释的蛋白质编码开放阅读框(ORF)之外发现广泛的翻译现象令人惊讶,这引发了一种有趣的可能性,即这些新发现的翻译区域可能具有未被识别的蛋白质编码或基因调控功能。在这里,我们强调最近的发现,这些发现提供了证据,表明这些新发现的一些翻译短开放阅读框(sORF)编码功能性的、以前未被发现的小蛋白质,而其他一些则具有调控作用。基于已知的例子,我们还将推测这些翻译区域可能对细胞内稳态和基因调控具有的假定额外作用以及潜在的更广泛影响。