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用于控制硫还原地杆菌基因表达和电输出的遗传开关及相关工具。

Genetic switches and related tools for controlling gene expression and electrical outputs of Geobacter sulfurreducens.

作者信息

Ueki Toshiyuki, Nevin Kelly P, Woodard Trevor L, Lovley Derek R

机构信息

Department of Microbiology, University of Massachusetts, Morrill Science Center IV North, 639 North Pleasant Street, Amherst, MA, 01003, USA.

出版信息

J Ind Microbiol Biotechnol. 2016 Nov;43(11):1561-1575. doi: 10.1007/s10295-016-1836-5. Epub 2016 Sep 22.

DOI:10.1007/s10295-016-1836-5
PMID:27659960
Abstract

Physiological studies and biotechnology applications of Geobacter species have been limited by a lack of genetic tools. Therefore, potential additional molecular strategies for controlling metabolism were explored. When the gene for citrate synthase, or acetyl-CoA transferase, was placed under the control of a LacI/IPTG regulator/inducer system, cells grew on acetate only in the presence of IPTG. The TetR/AT system could also be used to control citrate synthase gene expression and acetate metabolism. A strain that required IPTG for growth on D-lactate was constructed by placing the gene for D-lactate dehydrogenase under the control of the LacI/IPTG system. D-Lactate served as an inducer in a strain in which a D-lactate responsive promoter and transcription repressor were used to control citrate synthase expression. Iron- and potassium-responsive systems were successfully incorporated to regulate citrate synthase expression and growth on acetate. Linking the appropriate degradation tags on the citrate synthase protein made it possible to control acetate metabolism with either the endogenous ClpXP or exogenous Lon protease and tag system. The ability to control current output from Geobacter biofilms and the construction of an AND logic gate for acetate metabolism suggested that the tools developed may be applicable for biosensor and biocomputing applications.

摘要

地杆菌属物种的生理学研究和生物技术应用一直受到缺乏遗传工具的限制。因此,人们探索了控制新陈代谢的潜在额外分子策略。当柠檬酸合酶或乙酰辅酶A转移酶的基因置于LacI/IPTG调节/诱导系统的控制下时,细胞仅在IPTG存在的情况下才能利用乙酸盐生长。TetR/AT系统也可用于控制柠檬酸合酶基因的表达和乙酸盐代谢。通过将D-乳酸脱氢酶的基因置于LacI/IPTG系统的控制下,构建了一种在D-乳酸上生长需要IPTG的菌株。在一个使用D-乳酸响应启动子和转录阻遏物来控制柠檬酸合酶表达的菌株中,D-乳酸充当诱导剂。成功整合了铁和钾响应系统,以调节柠檬酸合酶的表达和在乙酸盐上的生长。在柠檬酸合酶蛋白上连接适当的降解标签,使得利用内源性ClpXP或外源性Lon蛋白酶和标签系统控制乙酸盐代谢成为可能。控制地杆菌生物膜电流输出的能力以及构建用于乙酸盐代谢的与门逻辑表明,所开发的工具可能适用于生物传感器和生物计算应用。

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