• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

从埃塞俄比亚达纳基尔洼地岩盐中分离出的极端嗜盐嗜盐碱红菌SAH-A6的基因组序列草图

Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia.

作者信息

Gibtan Ashagrie, Woo Mingyeong, Oh Dokyung, Park Kyounghee, Lee Han-Seung, Sohn Jae Hak, Lee Dong-Woo, Shin Jung-Kue, Lee Sang-Jae

机构信息

Major in Food Biotechnology and The Research Center for Extremophiles & Marine Microbiology, Silla University, Busan 46958, Republic of Korea.

School of Applied Bioscience, Kyungpook National University, Daegu 41566, Republic of Korea.

出版信息

Genom Data. 2016 Aug 30;10:30-2. doi: 10.1016/j.gdata.2016.08.014. eCollection 2016 Dec.

DOI:10.1016/j.gdata.2016.08.014
PMID:27668183
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5024332/
Abstract

The draft genome sequence of Halorubrum sp. SAH-A6, isolated from commercial rock salts of the Danakil depression, Ethiopia. The genome comprised 3,325,770 bp, with the G + C content of 68.0%. The strain has many genes which are responsible for secondary metabolites biosynthesis, transport and catabolism as compared to other Halorubrum archaea members. Abundant genes responsible for numerous transport systems, solute accumulation, and aromatic/sulfur decomposition were detected. The first genomic analysis encourages further research on comparative genomics, and biotechnological applications. The NCBI accession number for this genome is SAMN04278861 and ID: 4278861 and strain deposited with accession number KCTC 43215.

摘要

从埃塞俄比亚达纳吉尔凹地的商业岩盐中分离出的嗜盐红菌属SAH-A6的基因组序列草图。该基因组由3325770个碱基对组成,G + C含量为68.0%。与其他嗜盐红古菌成员相比,该菌株有许多负责次生代谢物生物合成、运输和分解代谢的基因。检测到大量负责多种运输系统、溶质积累以及芳香族/硫分解的基因。首次基因组分析鼓励对比较基因组学和生物技术应用进行进一步研究。该基因组的NCBI登录号为SAMN04278861,ID为4278861,菌株保藏号为KCTC 43215。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b308/5024332/3c2376f80518/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b308/5024332/3c2376f80518/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b308/5024332/3c2376f80518/gr1.jpg

相似文献

1
Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia.从埃塞俄比亚达纳基尔洼地岩盐中分离出的极端嗜盐嗜盐碱红菌SAH-A6的基因组序列草图
Genom Data. 2016 Aug 30;10:30-2. doi: 10.1016/j.gdata.2016.08.014. eCollection 2016 Dec.
2
Halorubrum aethiopicum sp. nov., an extremely halophilic archaeon isolated from commercial rock salt.嗜盐嗜卤红菌新种,一种从商业岩盐中分离出的极端嗜盐古菌。
Int J Syst Evol Microbiol. 2018 Jan;68(1):416-422. doi: 10.1099/ijsem.0.002525. Epub 2017 Dec 11.
3
Draft genome sequence of the halophilic KTB 131 isolated from Topan salt of the Jeon-nam in Korea.从韩国全罗南道托潘盐中分离出的嗜盐菌KTB 131的基因组序列草图。
Genom Data. 2017 Jul 23;14:18-20. doi: 10.1016/j.gdata.2017.07.010. eCollection 2017 Dec.
4
Halorubrum glutamatedens sp. nov., a Halophilic Archaeon Isolated from a Rock Salt.嗜盐古菌谷氨酸盐嗜盐红菌新种,从岩盐中分离得到。
Curr Microbiol. 2019 Jan;76(1):52-56. doi: 10.1007/s00284-018-1583-0. Epub 2018 Oct 13.
5
Draft genome sequence of Halorubrum tropicale strain V5, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico.热带嗜盐红菌V5菌株的基因组序列草图,该菌株是从波多黎各卡沃罗霍的太阳能盐场分离出的一种新型嗜盐古菌。
Genom Data. 2016 Feb 6;7:284-6. doi: 10.1016/j.gdata.2016.02.004. eCollection 2016 Mar.
6
Draft genome sequence of Halorubrum halophilum B8(T), an extremely halophilic archaeon isolated from salt-fermented seafood.嗜盐嗜盐红菌B8(T)的基因组序列草图,该菌是从盐渍发酵海产品中分离出的一种极端嗜盐古菌。
Mar Genomics. 2014 Dec;18 Pt B:117-8. doi: 10.1016/j.margen.2014.08.005. Epub 2014 Aug 30.
7
Draft genome sequence of sp. strain X and sp. strain III isolated from Lake Karum, Danakil Depression, Ethiopia.从埃塞俄比亚达纳基尔凹地卡鲁姆湖分离出的X菌株和III菌株的基因组序列草图。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0126023. doi: 10.1128/mra.01260-23. Epub 2024 Feb 22.
8
Halorubrum pallidum sp. nov., an extremely halophilic archaeon isolated from a subterranean rock salt.苍白嗜盐古菌新种,一种从地下岩盐中分离出的极端嗜盐古菌。
Int J Syst Evol Microbiol. 2016 Aug;66(8):2980-2986. doi: 10.1099/ijsem.0.001129. Epub 2016 May 4.
9
Halorubrum persicum sp. nov., an extremely halophilic archaeon isolated from sediment of a hypersaline lake.嗜盐栖热古菌新种,一种从超盐湖沉积物中分离出的极端嗜盐古菌。
Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1770-1778. doi: 10.1099/ijs.0.000175. Epub 2015 Mar 5.
10
Halorubrum salsamenti sp. nov., a Novel Halophilic Archaeon Isolated from a Brine of Salt Mine.盐沼嗜盐古菌新种,一种从盐矿卤水中分离出的新型嗜盐古菌。
Curr Microbiol. 2017 Nov;74(11):1358-1364. doi: 10.1007/s00284-017-1325-8. Epub 2017 Aug 17.

引用本文的文献

1
The Ecology of Subaerial Biofilms in Dry and Inhospitable Terrestrial Environments.干旱和恶劣陆地环境中的气生生物膜生态学
Microorganisms. 2019 Sep 23;7(10):380. doi: 10.3390/microorganisms7100380.
2
Lipid Biomarker and Carbon Stable Isotope Survey on the Dallol Hydrothermal System in Ethiopia.脂质生物标志物和碳稳定同位素在埃塞俄比亚的 Dallol 热液系统中的研究。
Astrobiology. 2019 Dec;19(12):1474-1489. doi: 10.1089/ast.2018.1963. Epub 2019 May 21.
3
Draft genome sequence of the halophilic KTB 131 isolated from Topan salt of the Jeon-nam in Korea.

本文引用的文献

1
Population and genomic analysis of the genus Halorubrum.卤杆菌属的种群和基因组分析。
Front Microbiol. 2014 Apr 11;5:140. doi: 10.3389/fmicb.2014.00140. eCollection 2014.
2
Pfam: the protein families database.Pfam:蛋白质家族数据库。
Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27.
3
LPSN--list of prokaryotic names with standing in nomenclature.LPSN--具有命名地位的原核生物名称列表。
从韩国全罗南道托潘盐中分离出的嗜盐菌KTB 131的基因组序列草图。
Genom Data. 2017 Jul 23;14:18-20. doi: 10.1016/j.gdata.2017.07.010. eCollection 2017 Dec.
Nucleic Acids Res. 2014 Jan;42(Database issue):D613-6. doi: 10.1093/nar/gkt1111. Epub 2013 Nov 15.
4
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
5
Diversity of halophilic archaea in fermented foods and human intestines and their application.发酵食品和人类肠道中嗜盐古菌的多样性及其应用。
J Microbiol Biotechnol. 2013 Dec;23(12):1645-53. doi: 10.4014/jmb.1308.08015.
6
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
7
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.介绍 EzTaxon-e:一个具有代表未培养物种的分类群的细菌 16S rRNA 基因序列数据库。
Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):716-721. doi: 10.1099/ijs.0.038075-0. Epub 2011 Nov 25.
8
IMG ER: a system for microbial genome annotation expert review and curation.IMG ER:一个用于微生物基因组注释专家评审和整理的系统。
Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.
9
Real-time DNA sequencing from single polymerase molecules.来自单个聚合酶分子的实时DNA测序。
Science. 2009 Jan 2;323(5910):133-8. doi: 10.1126/science.1162986. Epub 2008 Nov 20.
10
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer:核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.