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本文引用的文献

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Mol Ecol Resour. 2009 Nov;9(6):1431-8. doi: 10.1111/j.1755-0998.2009.02592.x. Epub 2009 Mar 17.
2
Identifying gastropod spawn from DNA barcodes: possible but not yet practicable.从 DNA 条码识别腹足动物产卵:可能但尚不可行。
Mol Ecol Resour. 2009 Sep;9(5):1311-21. doi: 10.1111/j.1755-0998.2009.02576.x. Epub 2009 Feb 25.
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MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.MEGA5:用于最大似然法、进化距离法和最大简约法的分子进化遗传学分析。
Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.
4
DNA barcoding and phylogenetic analysis of Pectinidae (Mollusca: Bivalvia) based on mitochondrial COI and 16S rRNA genes.基于线粒体 COI 和 16S rRNA 基因的扇贝科(软体动物:双壳纲) DNA 条形码和系统发育分析。
Mol Biol Rep. 2011 Jan;38(1):291-9. doi: 10.1007/s11033-010-0107-1. Epub 2010 Mar 25.
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.DnaSP v5:一款用于DNA多态性数据综合分析的软件。
Bioinformatics. 2009 Jun 1;25(11):1451-2. doi: 10.1093/bioinformatics/btp187. Epub 2009 Apr 3.
6
COI (cytochrome oxidase-I) sequence based studies of Carangid fishes from Kakinada coast, India.基于细胞色素氧化酶-I(COI)序列对印度卡基纳达海岸鲹科鱼类的研究。
Mol Biol Rep. 2009 Sep;36(7):1733-40. doi: 10.1007/s11033-008-9375-4. Epub 2008 Oct 12.
7
Sphaeroma terebrans: A Threat to the Mangroves of Southwestern Florida.沙蚕属 terebrans:佛罗里达州西南部红树林的威胁。
Science. 1973 Oct 12;182(4108):173-4. doi: 10.1126/science.182.4108.173.
8
Molecular discrimination of Perna (Mollusca: Bivalvia) species using the polymerase chain reaction and species-specific mitochondrial primers.利用聚合酶链反应和物种特异性线粒体引物对贻贝属(软体动物:双壳纲)物种进行分子鉴别。
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9
DNA barcoding a useful tool for taxonomists.DNA条形码技术——分类学家的得力工具。
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10
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species.动物生命条形码:近缘物种间细胞色素c氧化酶亚基1的差异
Proc Biol Sci. 2003 Aug 7;270 Suppl 1(Suppl 1):S96-9. doi: 10.1098/rsbl.2003.0025.

基于形态学和线粒体细胞色素 c 氧化酶亚基 I(COI)基因鉴定沙蚕属 terebrans。

Identification of Sphaeroma terebrans via morphology and the mitochondrial cytochrome c oxidase subunit I (COI) gene.

机构信息

School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China.

Management Bureau of Dongzhaigang Mangrove Natural Reserve, Haikou 571129, China.

出版信息

Zool Res. 2016 Sep 18;37(5):307-12. doi: 10.13918/j.issn.2095-8137.2016.5.307.

DOI:10.13918/j.issn.2095-8137.2016.5.307
PMID:27686791
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5071345/
Abstract

Sphaeroma terebrans, a wood-boring isopoda, is distributed worldwide in tropical and subtropical mangroves. The taxonomy of S. terebrans is usually based on morphological characteristics, with its molecular identification still poorly understood. The number of teeth on the uropodal exopod and the length of the propodus of the seventh pereopod are considered as the major morphological characteristics in S. terebrans, which can cause difficulty in regards to accurate identification. In this study, we identified S. terebrans via molecular and morphological data. Furthermore, the validity of the mitochondrial cytochrome c oxidase subunit I (COI) gene as a DNA barcode for the identification of genus Sphaeroma, including species S. terebrans, S. retrolaeve, and S. serratum, was examined. The mitochondrial COI gene sequences of all specimens were sequenced and analysed. The interspecific Kimura 2-parameter distances were higher than intraspecific distances and no intraspecific-interspecific distance overlaps were observed. In addition, genetic distance and nucleotide diversity (π) exhibited no differences within S. terebrans. Our results revealed that the mitochondrial COI gene can serve as a valid DNA barcode for the identification of S. terebrans. Furthermore, the number of teeth on the uropodal exopod and the length of the propodus of the seventh pereopod were found to be unreliable taxonomic characteristics for S. terebrans.

摘要

钻孔寄居蟹,一种蛀木等足目动物,分布于世界热带和亚热带红树林中。钻孔寄居蟹的分类通常基于形态特征,其分子鉴定仍知之甚少。尾节的游足外肢上的齿数和第七胸足的长节是钻孔寄居蟹的主要形态特征,这可能导致准确鉴定的困难。在这项研究中,我们通过分子和形态学数据鉴定了 Sphaeroma terebrans。此外,还检验了线粒体细胞色素 c 氧化酶亚基 I(COI)基因作为鉴定属 Sphaeroma 的 DNA 条码的有效性,包括 S. terebrans、S. retrolaeve 和 S. serratum 等物种。对所有标本的线粒体 COI 基因序列进行了测序和分析。种间 Kimura 2-参数距离高于种内距离,没有观察到种内-种间距离重叠。此外,S. terebrans 内的遗传距离和核苷酸多样性(π)没有差异。我们的结果表明,线粒体 COI 基因可作为鉴定 S. terebrans 的有效 DNA 条码。此外,尾节的游足外肢上的齿数和第七胸足的长节被发现是 S. terebrans 不可靠的分类特征。