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用于神经影像信息学的基于 Hafni 的大规模平台(HELPNI)。

HAFNI-enabled largescale platform for neuroimaging informatics (HELPNI).

作者信息

Makkie Milad, Zhao Shijie, Jiang Xi, Lv Jinglei, Zhao Yu, Ge Bao, Li Xiang, Han Junwei, Liu Tianming

机构信息

Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA.

School of Automation, Northwestern Polytechnical University, Xi'an, China.

出版信息

Brain Inform. 2015 Dec;2(4):225-238. doi: 10.1007/s40708-015-0024-0. Epub 2015 Nov 27.

Abstract

Tremendous efforts have thus been devoted on the establishment of functional MRI informatics systems that recruit a comprehensive collection of statistical/computational approaches for fMRI data analysis. However, the state-of-the-art fMRI informatics systems are especially designed for specific fMRI sessions or studies of which the data size is not really big, and thus has difficulty in handling fMRI 'big data.' Given the size of fMRI data are growing explosively recently due to the advancement of neuroimaging technologies, an effective and efficient fMRI informatics system which can process and analyze fMRI big data is much needed. To address this challenge, in this work, we introduce our newly developed informatics platform, namely, 'HAFNI-enabled largescale platform for neuroimaging informatics (HELPNI).' HELPNI implements our recently developed computational framework of sparse representation of whole-brain fMRI signals which is called holistic atlases of functional networks and interactions (HAFNI) for fMRI data analysis. HELPNI provides integrated solutions to archive and process large-scale fMRI data automatically and structurally, to extract and visualize meaningful results information from raw fMRI data, and to share open-access processed and raw data with other collaborators through web. We tested the proposed HELPNI platform using publicly available 1000 Functional Connectomes dataset including over 1200 subjects. We identified consistent and meaningful functional brain networks across individuals and populations based on resting state fMRI (rsfMRI) big data. Using efficient sampling module, the experimental results demonstrate that our HELPNI system has superior performance than other systems for large-scale fMRI data in terms of processing and storing the data and associated results much faster.

摘要

因此,人们付出了巨大努力来建立功能磁共振成像信息学系统,该系统采用了一系列全面的统计/计算方法来进行功能磁共振成像数据分析。然而,最先进的功能磁共振成像信息学系统是专门为特定的功能磁共振成像实验或数据量不大的研究设计的,因此在处理功能磁共振成像“大数据”方面存在困难。鉴于近年来由于神经成像技术的进步,功能磁共振成像数据量呈爆炸式增长,迫切需要一个能够处理和分析功能磁共振成像大数据的高效信息学系统。为应对这一挑战,在本研究中,我们介绍了我们新开发的信息学平台,即“基于HAFNI的神经成像信息学大规模平台(HELPNI)”。HELPNI实现了我们最近开发的全脑功能磁共振成像信号稀疏表示的计算框架,即用于功能磁共振成像数据分析的功能网络与相互作用整体图谱(HAFNI)。HELPNI提供了集成解决方案,可自动且结构化地存档和处理大规模功能磁共振成像数据,从原始功能磁共振成像数据中提取并可视化有意义的结果信息,并通过网络与其他合作者共享开放获取的处理后数据和原始数据。我们使用公开可用的包含1200多名受试者的1000个功能连接组数据集对所提出的HELPNI平台进行了测试。我们基于静息态功能磁共振成像(rsfMRI)大数据识别了个体和群体间一致且有意义的功能性脑网络。通过高效采样模块,实验结果表明,我们的HELPNI系统在处理和存储数据及相关结果方面比其他系统快得多,在处理大规模功能磁共振成像数据方面具有卓越性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fa2/4883176/5992cf03ccd1/40708_2015_24_Fig1_HTML.jpg

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