Paff Matthew L, Nuismer Scott L, Ellington Andrew D, Molineux Ian J, May Ryan H, Bull James J
Department of Integrative Biology, University of Texas at Austin, Austin, 78712 TX USA ; Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, 78712 TX USA.
Department of Biological Sciences, University of Idaho, Moscow, 83843 ID USA.
J Biol Eng. 2016 Oct 12;10:12. doi: 10.1186/s13036-016-0033-4. eCollection 2016.
We propose, model, and implement a novel system of population-level intervention against a virus. One context is a treatment against a chronic infection such as HIV. The underlying principle is a form of virus 'wars' in which a benign, transmissible agent is engineered to protect against infection by and spread of a lethal virus. In our specific case, the protective agent consists of two entities, a benign virus and a gene therapy vector mobilized by the benign virus.
Numerical analysis of a mathematical model identified parameter ranges in which adequate, population-wide protection is achieved. The protective system was implemented and tested using , bacteriophage M13 and a phagemid vector mobilized by M13 to block infection by the lethal phage T5. Engineering of M13 profoundly improved its dynamical properties for facilitating spread of the gene therapy vector. However, the gene therapy vector converts the host cell to resist T5 too slowly for protection on a time scale appropriate for T5.
Overall, there is a reasonable marriage between the mathematical model and the empirical system, suggesting that such models can be useful guides to the design of such systems even before the models incorporate most of the relevant biological details.
我们提出、构建并实施了一种针对病毒的新型群体水平干预系统。一种应用场景是针对慢性感染,如艾滋病毒的治疗。其基本原理是一种病毒“战争”形式,即设计一种良性、可传播的因子来预防致命病毒的感染和传播。在我们的具体案例中,保护因子由两个实体组成,一种良性病毒和由该良性病毒激活的基因治疗载体。
对一个数学模型的数值分析确定了能实现充分的群体范围保护的参数范围。使用噬菌体M13和由M13激活的噬菌粒载体实施并测试了保护系统,以阻断致命噬菌体T5的感染。对M13的工程改造极大地改善了其动力学特性,以促进基因治疗载体的传播。然而,基因治疗载体使宿主细胞对T5产生抗性的速度过慢,无法在适合T5的时间尺度上提供保护。
总体而言,数学模型与实证系统之间存在合理的契合,这表明即使在模型纳入大多数相关生物学细节之前,此类模型也可为这类系统的设计提供有用的指导。