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海蜗牛(软体动物门:腹足纲)线粒体DNA的高度多样性及其潜在成因

Mitochondrial DNA hyperdiversity and its potential causes in the marine periwinkle (Mollusca: Gastropoda).

作者信息

Fourdrilis Séverine, Mardulyn Patrick, Hardy Olivier J, Jordaens Kurt, de Frias Martins António Manuel, Backeljau Thierry

机构信息

Directorate Taxonomy and Phylogeny & JEMU, Royal Belgian Institute of Natural Sciences , Brussels , Belgium.

Evolutionary Biology and Ecology, Université Libre de Bruxelles , Brussels , Belgium.

出版信息

PeerJ. 2016 Oct 5;4:e2549. doi: 10.7717/peerj.2549. eCollection 2016.

Abstract

We report the presence of mitochondrial DNA (mtDNA) hyperdiversity in the marine periwinkle (Linnaeus, 1758), the first such case among marine gastropods. Our dataset consisted of concatenated 16S-COI-Cyt gene fragments. We used Bayesian analyses to investigate three putative causes underlying genetic variation, and estimated the mtDNA mutation rate, possible signatures of selection and the effective population size of the species in the Azores archipelago. The mtDNA hyperdiversity in is characterized by extremely high haplotype diversity ( = 0.999 ± 0.001), high nucleotide diversity ( = 0.013 ± 0.001), and neutral nucleotide diversity above the threshold of 5% ( = 0.0677). Haplotype richness is very high even at spatial scales as small as 100. Yet, mtDNA hyperdiversity does not affect the ability of DNA barcoding to identify . The mtDNA hyperdiversity in is best explained by the remarkably high mutation rate at the COI locus ( = 5.82 × 10 per site per year or = 1.99 × 10 mutations per nucleotide site per generation), whereas the effective population size of this planktonic-dispersing species is surprisingly small ( = 5, 256; CI = 1,312-3,7495) probably due to the putative influence of selection. Comparison with COI nucleotide diversity values in other organisms suggests that mtDNA hyperdiversity may be more frequently linked to high values and that mtDNA hyperdiversity may be more common across other phyla than currently appreciated.

摘要

我们报告了海洋滨螺(林奈,1758年)中存在线粒体DNA(mtDNA)高度多样性,这是海洋腹足纲动物中的首例此类情况。我们的数据集由串联的16S - COI - Cyt基因片段组成。我们使用贝叶斯分析来研究遗传变异背后的三个假定原因,并估计了亚速尔群岛该物种的mtDNA突变率、可能的选择特征以及有效种群大小。滨螺的mtDNA高度多样性的特征是单倍型多样性极高(= 0.999 ± 0.001)、核苷酸多样性高(= 0.013 ± 0.001)以及中性核苷酸多样性超过5%的阈值(= 0.0677)。即使在小至100的空间尺度下单倍型丰富度也非常高。然而,mtDNA高度多样性并不影响DNA条形码识别滨螺的能力。滨螺的mtDNA高度多样性最好由COI基因座处极高的突变率来解释(=每年每个位点5.82 × 10 或 =每代每个核苷酸位点1.99 × 10 个突变),而这种浮游扩散物种的有效种群大小出奇地小(= 5,256;置信区间 = 1,312 - 37,495),这可能是由于假定的选择影响。与其他生物的COI核苷酸多样性值比较表明,mtDNA高度多样性可能更频繁地与高 值相关联,并且mtDNA高度多样性在其他门中可能比目前所认识的更为普遍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/66ee/5068447/b0f08bc4c7b6/peerj-04-2549-g001.jpg

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