Of Clams and Clades: Genetic Diversity and Connectivity of Small Giant Clams () in the Southern Pacific Ocean.

Giant clams ( and ) are large marine bivalves occupying tropical and subtropical reefs in the Indo-Pacific. Giant clam populations have declined in many areas of the Indo-Pacific and continue to be threatened by harvesting and environmental change. The small giant clam () occurs throughout the Indo-Pacific and has been subject to several phylogeographic studies across its range. However, given its broad range, there are several areas where the genetic diversity and connectivity of populations has not been characterised. Here, we analyse the mitochondrial marker cytochrome oxidase 1 (CO1) to examine the genetic diversity and connectivity of in two regions: Australia's Coral Sea Marine Park and the Cook Islands. Samples were collected from 13 reefs within the Coral Sea Marine Park and ten islands within the Cook Islands archipelago. across the sampled region of the Coral Sea did not display any population structure, whereas significant population structure was detected for within the Cook Islands. For the Cook Islands, most pairwise comparisons involving an island in the northern group (Manihiki) were significant, as were comparisons for Palmerston (a more centrally located island) and the southern islands, Rarotonga and Mangaia. Both regions displayed high haplotype diversities (> 0.90), indicating that they are important repositories of genetic diversity. Additional CO1 data from throughout 's distribution showed that the Coral Sea clams belonged to the clade occurring in the South-Western Pacific Ocean, whilst those from the Cook Islands belonged to a unique clade found in the Central Pacific Ocean. This clade extended from Fiji in the west to French Polynesia in the east and the atolls of Palmyra and Tarawa (Kiribati) in the north. Our assessment of genetic diversity and population structure in these regions will assist with management decisions for the species.