来自西伯利亚一名HIV阳性患者的北京B0/W谱系B9741菌株的基因组序列草图
Draft genome sequence of strain B9741 of Beijing B0/W lineage from HIV positive patient from Siberia.
作者信息
Shur K V, Zaychikova M V, Mikheecheva N E, Klimina K M, Bekker O B, Zhdanova S N, Ogarkov O B, Danilenko V N
机构信息
Laboratory of Bacterial Genetics, Vavilov Institute of General Genetics (VIGG RAS), Gubkina str. 3, 119991 Moscow, Russia.
Scientific Centre for Family Health and Human Reproduction Problems (SCFHHRP), Irkutsk, Russia.
出版信息
Genom Data. 2016 Aug 3;10:61-62. doi: 10.1016/j.gdata.2016.08.001. eCollection 2016 Dec.
Abstract
We report a draft genome sequence of strain B9741 belonging to Beijing B0/W lineage isolated from a HIV patient from Siberia, Russia. This clinical isolate showed MDR phenotype and resistance to isoniazid, rifampin, streptomycin and pyrazinamide. We analyzed SNPs associated with virulence and resistance. The draft genome sequence and annotation have been deposited at GenBank under the accession NZ_LVJJ00000000.
摘要
我们报告了从俄罗斯西伯利亚一名艾滋病患者分离出的属于北京B0/W谱系的菌株B9741的基因组序列草图。该临床分离株表现出多重耐药表型，对异烟肼、利福平、链霉素和吡嗪酰胺耐药。我们分析了与毒力和耐药性相关的单核苷酸多态性。该基因组序列草图及注释已提交至GenBank，登录号为NZ_LVJJ00000000。
相似文献
1
Draft genome sequence of strain B9741 of Beijing B0/W lineage from HIV positive patient from Siberia.
Genom Data. 2016 Aug 3;10:61-62. doi: 10.1016/j.gdata.2016.08.001. eCollection 2016 Dec.
2
Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence.
Genome Announc. 2015 May 7;3(3):e00403-15. doi: 10.1128/genomeA.00403-15.
3
Whole genome analysis of an MDR Beijing/W strain of Mycobacterium tuberculosis with large genomic deletions associated with resistance to isoniazid.
Gene. 2016 May 15;582(2):128-36. doi: 10.1016/j.gene.2016.02.003. Epub 2016 Feb 4.
4
A Nonsynonymous SNP Catalog of Mycobacterium tuberculosis Virulence Genes and Its Use for Detecting New Potentially Virulent Sublineages.
Genome Biol Evol. 2017 Apr 1;9(4):887-899. doi: 10.1093/gbe/evx053.
5
Proteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains.
J Proteomics. 2019 Feb 10;192:18-26. doi: 10.1016/j.jprot.2018.07.002. Epub 2018 Jul 24.
6
Major genotype families and epidemic clones of Mycobacterium tuberculosis in Omsk region, Western Siberia, Russia, marked by a high burden of tuberculosis-HIV coinfection.
Tuberculosis (Edinb). 2018 Jan;108:163-168. doi: 10.1016/j.tube.2017.12.003. Epub 2017 Dec 12.
7
Genome sequence and analysis of Mycobacterium tuberculosis strain SWLPK.
J Glob Antimicrob Resist. 2018 Jun;13:211-213. doi: 10.1016/j.jgar.2018.04.014. Epub 2018 May 12.
8
Genome sequencing and annotation of multidrug resistant Mycobacterium tuberculosis (MDR-TB) PR10 strain.
Genom Data. 2016 Jan 9;7:245-6. doi: 10.1016/j.gdata.2016.01.002. eCollection 2016 Mar.
9
[Meta analysis on the correlation between Mycobacterium tuberculosis Beijing family strains and drug resistance].
Zhonghua Yu Fang Yi Xue Za Zhi. 2012 Feb;46(2):158-64.
10
Tuberculous spondylitis in Russia and prominent role of multidrug-resistant clone Mycobacterium tuberculosis Beijing B0/W148.
Antimicrob Agents Chemother. 2015 Apr;59(4):2349-57. doi: 10.1128/AAC.04221-14. Epub 2015 Feb 2.
引用本文的文献
1
A Nonsynonymous SNP Catalog of Mycobacterium tuberculosis Virulence Genes and Its Use for Detecting New Potentially Virulent Sublineages.
Genome Biol Evol. 2017 Apr 1;9(4):887-899. doi: 10.1093/gbe/evx053.
本文引用的文献
1
Mycobacterium tuberculosis Type II Toxin-Antitoxin Systems: Genetic Polymorphisms and Functional Properties and the Possibility of Their Use for Genotyping.
PLoS One. 2015 Dec 14;10(12):e0143682. doi: 10.1371/journal.pone.0143682. eCollection 2015.
2
[The virulence factors of Mycobacterium tuberculosis: genetic control, new conceptions].
Genetika. 2014 Aug;50(8):885-908.
3
Multiple toxin-antitoxin systems in Mycobacterium tuberculosis.
Toxins (Basel). 2014 Mar 6;6(3):1002-20. doi: 10.3390/toxins6031002.
4
Clade-specific virulence patterns of Mycobacterium tuberculosis complex strains in human primary macrophages and aerogenically infected mice.
mBio. 2013 Jul 30;4(4):e00250-13. doi: 10.1128/mBio.00250-13.
5
Russian "successful" clone B0/W148 of Mycobacterium tuberculosis Beijing genotype: a multiplex PCR assay for rapid detection and global screening.
J Clin Microbiol. 2012 Nov;50(11):3757-9. doi: 10.1128/JCM.02001-12. Epub 2012 Aug 29.
6
High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms.
PLoS One. 2012;7(7):e39855. doi: 10.1371/journal.pone.0039855. Epub 2012 Jul 2.
7
Mechanistic insights into a novel exporter-importer system of Mycobacterium tuberculosis unravel its role in trafficking of iron.
PLoS One. 2008 May 7;3(5):e2087. doi: 10.1371/journal.pone.0002087.
8
Identification of an ABC transporter required for iron acquisition and virulence in Mycobacterium tuberculosis.
J Bacteriol. 2006 Jan;188(2):424-30. doi: 10.1128/JB.188.2.424-430.2006.
9
The PIN-domain toxin-antitoxin array in mycobacteria.
Trends Microbiol. 2005 Aug;13(8):360-5. doi: 10.1016/j.tim.2005.06.008.
10
Mammalian cell-entry proteins encoded by the mce3 operon of Mycobacterium tuberculosis are expressed during natural infection in humans.
Scand J Immunol. 2004 Oct;60(4):382-91. doi: 10.1111/j.0300-9475.2004.01490.x.
Zotero 插件