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氧化磷酸化中ATP合成的热力学效率。

The thermodynamic efficiency of ATP synthesis in oxidative phosphorylation.

作者信息

Nath Sunil

机构信息

Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, Delhi, Hauz Khas, New Delhi 110016, India.

出版信息

Biophys Chem. 2016 Dec;219:69-74. doi: 10.1016/j.bpc.2016.10.002. Epub 2016 Oct 15.

Abstract

As the chief energy source of eukaryotic cells, it is important to determine the thermodynamic efficiency of ATP synthesis in oxidative phosphorylation (OX PHOS). Previous estimates of the thermodynamic efficiency of this vital process have ranged from Lehninger's original back-of-the-envelope calculation of 38% to the often quoted value of 55-60% in current textbooks of biochemistry, to high values of 90% from recent information theoretic considerations, and reports of realizations of close to ideal 100% efficiencies by single molecule experiments. Hence this problem has been reinvestigated from first principles. The overall thermodynamic efficiency of ATP synthesis in the mitochondrial energy transduction OX PHOS process has been found to lie between 40 and 41% from four different approaches based on a) estimation using structural and biochemical data, b) fundamental nonequilibrium thermodynamic analysis, c) novel insights arising from Nath's torsional mechanism of energy transduction and ATP synthesis, and d) the overall balance of cellular energetics. The torsional mechanism also offers an explanation for the observation of a thermodynamic efficiency approaching 100% in some experiments. Applications of the unique, molecular machine mode of functioning of FF-ATP synthase involving direct inter-conversion of chemical and mechanical energies in the design and fabrication of novel, man-made mechanochemical devices have been envisaged, and some new ways to exorcise Maxwell's demon have been proposed. It is hoped that analysis of the fundamental problem of energy transduction in OX PHOS from a fresh perspective will catalyze new avenues of research in this interdisciplinary field.

摘要

作为真核细胞的主要能量来源,确定氧化磷酸化(OX PHOS)中ATP合成的热力学效率很重要。此前对这一重要过程的热力学效率估计范围较广,从莱宁格最初粗略计算的38%,到当前生物化学教科书中常引用的55 - 60%,再到近期信息论考量得出的高达90%,以及单分子实验实现接近理想100%效率的报道。因此,从第一原理重新研究了这个问题。基于以下四种不同方法发现,线粒体能量转导OX PHOS过程中ATP合成的整体热力学效率在40%至41%之间:a)使用结构和生化数据进行估计;b)基本非平衡热力学分析;c)纳特能量转导与ATP合成扭转机制产生的新见解;d)细胞能量学的整体平衡。扭转机制也为某些实验中观察到接近100%的热力学效率提供了解释。设想了F₁F₀ - ATP合酶独特的分子机器功能模式在新型人造机械化学装置设计与制造中的应用,其中涉及化学能和机械能的直接相互转换,并且提出了一些消除麦克斯韦妖的新方法。希望从全新角度分析OX PHOS中能量转导的基本问题能够催生出这一跨学科领域的新研究途径。

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