Suppr超能文献

从深水地平线漏油事故受油污染海水中培养的海洋菌株O3.65的基因组序列草图。

Draft genome sequence of the marine strain O3.65, cultivated from oil-polluted seawater of the Deepwater Horizon oil spill.

作者信息

Giebel Helge-Ansgar, Klotz Franziska, Voget Sonja, Poehlein Anja, Grosser Katrin, Teske Andreas, Brinkhoff Thorsten

机构信息

Institute for Chemistry and Biology of the Marine Environment (ICBM), University of Oldenburg, Oldenburg, Germany.

Department of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Germany.

出版信息

Stand Genomic Sci. 2016 Oct 13;11:81. doi: 10.1186/s40793-016-0201-7. eCollection 2016.

Abstract

The marine alphaproteobacterium strain O3.65 was isolated from an enrichment culture of surface seawater contaminated with weathered oil (slicks) from the Deepwater Horizon (DWH) oil spill and belongs to the ubiquitous, diverse and ecological relevant group within the . Here, we present a preliminary set of physiological features of strain O3.65 and a description and annotation of its draft genome sequence. Based on our data we suggest potential ecological roles of the isolate in the degradation of crude oil within the network of the oil-enriched microbial community. The draft genome comprises 4,852,484 bp with 4,591 protein-coding genes and 63 RNA genes. Strain O3.65 utilizes pentoses, hexoses, disaccharides and amino acids as carbon and energy source and is able to grow on several hydroxylated and substituted aromatic compounds. Based on 16S rRNA gene comparison the closest described and validated strain is DSM 17395, however, strain O3.65 is lacking several phenotypic and genomic characteristics specific for the genus . Phylogenomic analyses based on the whole genome support extensive genetic exchange of strain O3.65 with members of the genus , potentially by using the secretion system type IV. Our physiological observations are consistent with the genomic and phylogenomic analyses and support that strain O3.65 is a novel species of a new genus within the .

摘要

海洋α-变形菌菌株O3.65是从受“深水地平线”(DWH)石油泄漏风化油(浮油)污染的表层海水富集培养物中分离得到的,属于该菌属中普遍存在、种类多样且与生态相关的类群。在此,我们展示了菌株O3.65的一组初步生理特征,并对其基因组草图序列进行了描述和注释。基于我们的数据,我们提出了该分离株在富油微生物群落网络中原油降解过程中的潜在生态作用。基因组草图包含4,852,484个碱基对,有4,591个蛋白质编码基因和63个RNA基因。菌株O3.65利用戊糖、己糖、二糖和氨基酸作为碳源和能源,并且能够在几种羟基化和取代的芳香化合物上生长。基于16S rRNA基因比较,最接近的已描述和验证菌株是DSM 17395,然而,菌株O3.65缺乏该菌属特有的几个表型和基因组特征。基于全基因组的系统基因组分析支持菌株O3.65与该菌属成员之间广泛的基因交换,可能是通过IV型分泌系统。我们的生理观察结果与基因组和系统基因组分析一致,并支持菌株O3.65是该菌属内一个新属的新物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7dd/5064897/9d7d9f945445/40793_2016_201_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验