• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

一株对杂草柱腺独行菜具有除草特性的内生绿黄假单胞菌的高质量基因组草图序列

High-Quality Draft Genome Sequence of an Endophytic Pseudomonas viridiflava Strain with Herbicidal Properties against Its Host, the Weed Lepidium draba L.

作者信息

Samad Abdul, Trognitz Friederike, Antonielli Livio, Compant Stéphane, Sessitsch Angela

机构信息

AIT Austrian Institute of Technology GmbH, Bioresources Unit, Tulln, Austria.

AIT Austrian Institute of Technology GmbH, Bioresources Unit, Tulln, Austria

出版信息

Genome Announc. 2016 Oct 20;4(5):e01170-16. doi: 10.1128/genomeA.01170-16.

DOI:10.1128/genomeA.01170-16
PMID:27795282
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5073269/
Abstract

Here, we report the draft genome sequence of Pseudomonas viridiflava strain CDRTc14 a pectinolytic bacterium showing herbicidal activity, isolated from the root of Lepidium draba L. growing as a weed in an Austrian vineyard. The availability of this genome sequence allows us to investigate the genetic basis of plant-microbe interactions.

摘要

在此，我们报告了绿黄假单胞菌菌株CDRTc14的基因组序列草图，该菌株是一种具有除草活性的果胶分解细菌，从奥地利葡萄园里作为杂草生长的辣根独行菜的根部分离得到。该基因组序列的可得性使我们能够研究植物-微生物相互作用的遗传基础。

相似文献

1
High-Quality Draft Genome Sequence of an Endophytic Pseudomonas viridiflava Strain with Herbicidal Properties against Its Host, the Weed Lepidium draba L.一株对杂草柱腺独行菜具有除草特性的内生绿黄假单胞菌的高质量基因组草图序列
Genome Announc. 2016 Oct 20;4(5):e01170-16. doi: 10.1128/genomeA.01170-16.
2
Comparative genome analysis of the vineyard weed endophyte Pseudomonas viridiflava CDRTc14 showing selective herbicidal activity.具有选择性除草活性的葡萄园杂草内生菌恶臭假单胞菌 CDRTc14 的比较基因组分析。
Sci Rep. 2017 Dec 11;7(1):17336. doi: 10.1038/s41598-017-16495-y.
3
First Report of Rhizoctonia spp. Causing a Root Rot of the Invasive Rangeland Weed Lepidium draba in North America.北美首次报道丝核菌属引起入侵牧场杂草白芥根腐病
Plant Dis. 2014 Sep;98(9):1278. doi: 10.1094/PDIS-03-14-0300-PDN.
4
First Report of Anthracnose Stem Canker of the Invasive Perennial Weed Lepidium draba Caused by Colletotrichum higginsianum in Europe.欧洲由瓜类炭疽菌引起的入侵多年生杂草白芥炭疽茎溃疡病的首次报道
Plant Dis. 2010 Sep;94(9):1166. doi: 10.1094/PDIS-94-9-1166C.
5
First Report of a Root and Crown Disease of the Invasive Weed Lepidium draba Caused by Phoma macrostoma.由大茎点霉引起的入侵杂草白芥根冠病害的首次报道
Plant Dis. 2012 Jan;96(1):145. doi: 10.1094/PDIS-02-11-0107.
6
First Report of a Leaf Spot Caused by Alternaria brassicae on the Invasive Weed Lepidium draba in North America.北美入侵杂草北美独行菜上由芸苔链格孢引起的叶斑病的首次报道
Plant Dis. 2009 Aug;93(8):846. doi: 10.1094/PDIS-93-8-0846A.
7
Protective effects of Lepidium draba L. leaves extract on testis histopathology, oxidative stress indicators, serum reproductive hormones and inflammatory signalling in oxymetholone-treated rat.独行菜叶片提取物对氧甲氢龙处理大鼠睾丸组织病理学、氧化应激指标、血清生殖激素和炎症信号的保护作用。
Andrologia. 2021 Dec;53(11):e14239. doi: 10.1111/and.14239. Epub 2021 Sep 14.
8
Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants.葡萄藤及伴生杂草植物的共享微生物组和宿主特异性微生物组多样性与功能
Environ Microbiol. 2017 Apr;19(4):1407-1424. doi: 10.1111/1462-2920.13618. Epub 2017 Jan 23.
9
Biochemical Diversity, Pathogenicity and Phylogenetic Analysis of from Bean and Weeds in Northern Spain.西班牙北部豆类和杂草中 的生化多样性、致病性及系统发育分析。 需注意，原文中“from Bean and Weeds in Northern Spain”前似乎少了某个关键主体，导致句子不太完整准确。
Microorganisms. 2022 Jul 29;10(8):1542. doi: 10.3390/microorganisms10081542.
10
First Report of a Leaf Spot Caused by Cercospora bizzozeriana on Lepidium draba subsp. draba in Tunisia.突尼斯首次报道由比氏尾孢菌引起的田野白芥叶斑病。
Plant Dis. 2005 Feb;89(2):206. doi: 10.1094/PD-89-0206A.

引用本文的文献

1
Plant-Associated Bacteria as Sources for the Development of Bioherbicides.植物相关细菌作为生物除草剂开发的来源
Plants (Basel). 2022 Dec 6;11(23):3404. doi: 10.3390/plants11233404.
2
Pseudomonas viridiflava: An internal outsider of the Pseudomonas syringae species complex.铜绿假单胞菌：丁香假单胞菌种复合体的内部局外人。
Mol Plant Pathol. 2022 Jan;23(1):3-15. doi: 10.1111/mpp.13133. Epub 2021 Aug 31.
3
Beneficial Endophytic Bacteria- Interaction for Crop Enhancement and Resistance to Phytopathogens.有益内生细菌——促进作物生长及增强对植物病原体抗性的相互作用
Front Microbiol. 2019 Dec 19;10:2888. doi: 10.3389/fmicb.2019.02888. eCollection 2019.
4
Comparative genome analysis of the vineyard weed endophyte Pseudomonas viridiflava CDRTc14 showing selective herbicidal activity.具有选择性除草活性的葡萄园杂草内生菌恶臭假单胞菌 CDRTc14 的比较基因组分析。
Sci Rep. 2017 Dec 11;7(1):17336. doi: 10.1038/s41598-017-16495-y.

本文引用的文献

1
Bacterial Streak and Bulb Rot of Sweet Onion: II. Epiphytic Survival of Pseudomonas viridiflava in Association with Multiple Weed Hosts.甜洋葱的细菌性条斑病和鳞茎腐烂病：II. 绿黄假单胞菌在多种杂草寄主上的附生存活情况
Plant Dis. 1998 Aug;82(8):935-938. doi: 10.1094/PDIS.1998.82.8.935.
2
The Pseudomonas viridiflava phylogroups in the P. syringae species complex are characterized by genetic variability and phenotypic plasticity of pathogenicity-related traits.丁香假单胞菌物种复合体中的绿脓杆菌 phylogroups 以与致病性相关特征的遗传变异性和表型可塑性为特征。
Environ Microbiol. 2014 Jul;16(7):2301-15. doi: 10.1111/1462-2920.12433. Epub 2014 Mar 27.
3
PhyloSift: phylogenetic analysis of genomes and metagenomes.PhyloSift：基因组和宏基因组的系统发育分析。
PeerJ. 2014 Jan 9;2:e243. doi: 10.7717/peerj.243. eCollection 2014.
4
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
5
Whole-Genome Shotgun Sequence of Pseudomonas viridiflava, a Bacterium Species Pathogenic to Ararabidopsis thaliana.致拟南芥致病的细菌物种——绿黄假单胞菌的全基因组鸟枪法测序
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00116-12. Epub 2013 Jan 24.
6
Qualimap: evaluating next-generation sequencing alignment data.Qualimap：评估下一代测序比对数据。
Bioinformatics. 2012 Oct 15;28(20):2678-9. doi: 10.1093/bioinformatics/bts503. Epub 2012 Aug 22.
7
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.NCBI 参考序列（RefSeq）：现状、新特性和基因组注释政策。
Nucleic Acids Res. 2012 Jan;40(Database issue):D130-5. doi: 10.1093/nar/gkr1079. Epub 2011 Nov 24.
9
Fitness consequences of infection of Arabidopsis thaliana with its natural bacterial pathogen Pseudomonas viridiflava.拟南芥被其自然细菌病原体绿黄假单胞菌感染后的适合度后果。
Oecologia. 2007 May;152(1):71-81. doi: 10.1007/s00442-006-0631-9. Epub 2006 Dec 16.
10
Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana.感染拟南芥自然种群的绿黄假单胞菌中的遗传多样性、重组及隐秘分支
Genetics. 2005 Jan;169(1):21-35. doi: 10.1534/genetics.104.031351. Epub 2004 Oct 16.