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磷酸化调节牙本质磷蛋白肽的二级结构和功能。

Phosphorylation regulates the secondary structure and function of dentin phosphoprotein peptides.

作者信息

Villarreal-Ramirez Eduardo, Eliezer David, Garduño-Juarez Ramon, Gericke Arne, Perez-Aguilar Jose Manuel, Boskey Adele

机构信息

Mineralized Tissue Research Laboratory, Hospital for Special Surgery, New York, NY, USA; Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Worcester, MA, USA.

Department of Biochemistry, Weill Cornell Medical College, New York, NY, USA.

出版信息

Bone. 2017 Feb;95:65-75. doi: 10.1016/j.bone.2016.10.028. Epub 2016 Nov 1.

Abstract

Dentin phosphoprotein (DPP) is the most acidic protein in vertebrates and structurally is classified as an intrinsically disordered protein. Functionally, DPP is related to dentin and bone formation, however the specifics of such association remain unknown. Here, we used atomistic molecular dynamics simulations to screen selected binding domains of DPP onto hydroxyapatite (HA), which is one of its important interacting partners. From these results, we selected a functionally relevant peptide, Ace-SSDSSDSSDSSDSSD-NH2 (named P5) and its phosphorylated form (named P5P), for experimental characterization. SAXS experiments indicated that in solution P5 was disordered, possibly in an extended conformation while P5P displayed more compact globular conformations. Circular dichroism and FTIR confirmed that, either in the presence or absence of Ca/HA, P5 adopts a random coil structure, whereas its phosphorylated counterpart, P5P, has a more compact arrangement associated with conformations that display β-sheet and α-helix motifs when bound to HA. In solution, P5 inhibited HA crystal growth, whereas at similar concentrations, P5P stimulated it. These findings suggest that phosphorylation controls the transient formation of secondary and tertiary structure of DPP peptides, and, most likely of DPP itself, which in turn controls HA growth in solution and possibly HA growth in mineralized tissues.

摘要

牙本质磷蛋白(DPP)是脊椎动物中酸性最强的蛋白质,在结构上被归类为内在无序蛋白。在功能上,DPP与牙本质和骨形成有关,然而这种关联的具体细节仍不清楚。在这里,我们使用原子分子动力学模拟来筛选DPP在羟基磷灰石(HA)上的选定结合域,HA是其重要的相互作用伙伴之一。根据这些结果,我们选择了一个功能相关的肽,Ace-SSDSSDSSDSSDSSD-NH2(命名为P5)及其磷酸化形式(命名为P5P)进行实验表征。小角X射线散射实验表明,在溶液中P5是无序的,可能处于伸展构象,而P5P则显示出更紧凑的球状构象。圆二色性和傅里叶变换红外光谱证实,无论有无Ca/HA,P5都采用无规卷曲结构,而其磷酸化对应物P5P在与HA结合时具有更紧凑的排列,与显示β-折叠和α-螺旋基序的构象相关。在溶液中,P5抑制HA晶体生长,而在相似浓度下,P5P则刺激其生长。这些发现表明,磷酸化控制了DPP肽二级和三级结构的瞬时形成,很可能也控制了DPP本身的结构,进而控制了溶液中HA的生长以及矿化组织中HA的生长。

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1
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J Mater Chem B. 2015 Sep 7;3(33):6763-6772. doi: 10.1039/c5tb00764j. Epub 2015 Jul 29.
2
用于小角散射中快速形状测定的一个程序。
J Appl Crystallogr. 2009 Apr 1;42(Pt 2):342-346. doi: 10.1107/S0021889809000338. Epub 2009 Jan 24.
3
牙本质磷蛋白的转基因表达抑制骨骼发育。
Eur J Histochem. 2016 Mar 11;60(1):2587. doi: 10.4081/ejh.2016.2587.
4
内在无序蛋白质与生物矿化。
Matrix Biol. 2016 May-Jul;52-54:43-59. doi: 10.1016/j.matbio.2016.01.007. Epub 2016 Jan 22.
5
钙离子结合特性以及磷酸化对内在无序的星载蛋白的影响。
Biochemistry. 2015 Oct 27;54(42):6525-34. doi: 10.1021/acs.biochem.5b00933. Epub 2015 Oct 16.
6
磷酸化诱导的折叠:由无序到有序转变的翻译调控。
Trends Biochem Sci. 2015 May;40(5):243-4. doi: 10.1016/j.tibs.2015.02.007. Epub 2015 Mar 10.
7
蛋白质中瞬时和内在无序区域的功能作用。
FEBS J. 2015 Apr;282(7):1182-9. doi: 10.1111/febs.13202. Epub 2015 Jan 29.
8
磷酸化诱导无规卷曲蛋白折叠作为一种调控开关。
Nature. 2015 Mar 5;519(7541):106-9. doi: 10.1038/nature13999. Epub 2014 Dec 22.
9
蛋白激酶CK2对分级磷酸化的系统研究。
J Proteomics. 2015 Apr 6;118:49-62. doi: 10.1016/j.jprot.2014.10.020. Epub 2014 Nov 5.
10
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