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纳米粒子富勒烯(C60)表现出对耐药性伤寒沙门氏菌可能药物靶点的稳定结合能力,具有抗菌潜力——从计算角度和体外研究来看。

Nanoparticle Fullerene (C60) demonstrated stable binding with antibacterial potential towards probable targets of drug resistant Salmonella typhi - a computational perspective and in vitro investigation.

机构信息

a Department of Biotechnology Engineering , Dayananda Sagar Institutions, Visvesvaraya Technological University , Belagavi 560 078 , Karnataka , India.

出版信息

J Biomol Struct Dyn. 2017 Dec;35(16):3449-3468. doi: 10.1080/07391102.2016.1257441. Epub 2016 Nov 23.

Abstract

Salmonella typhi, a Gram negative bacterium, has become multidrug resistant (MDR) to wide classes of antibacterials which necessitate an alarming precaution. This study focuses on the binding potential and therapeutic insight of Nano-Fullerene C60 towards virulent targets of Salmonella typhi by computational prediction and preliminary in vitro assays. The clinical isolates of Salmonella typhi were collected and antibiotic susceptibility profiles were assessed. The drug targets of pathogen were selected by rigorous literature survey and gene network analysis by various metabolic network resources. Based on this study, 20 targets were screened and the 3D structures of few drug targets were retrieved from PDB and others were computationally predicted. The structures of nanoleads such as Fullerene C60, ZnO and CuO were retrieved from drug databases. The binding potential of these nanoleads towards all selected targets were predicted by molecular docking. The best docked conformations were screened and concept was investigated by preliminary bioassays. This study revealed that most of the isolates of Salmonella typhi were found to be MDR (p < .05). The theoretical models of selected drug targets showed high stereochemical validity. The molecular docking studies suggested that Fullerene C60 showed better binding affinity towards the drug targets when compared to ZnO and CuO. The preliminary in vitro assays suggested that 100 μg/L Fullerene C60 posses significant inhibitory activities and absence of drug resistance to this nanoparticle. This study suggests that Fullerene C60 can be scaled up as probable lead molecules against the major drug targets of MDR Salmonella typhi.

摘要

伤寒沙门氏菌是一种革兰氏阴性细菌,对广泛类别的抗菌药物具有多药耐药性(MDR),这需要引起警惕。本研究通过计算预测和初步的体外检测,关注纳米富勒烯 C60 对伤寒沙门氏菌毒力靶点的结合潜力和治疗见解。收集了临床分离的伤寒沙门氏菌,并评估了抗生素敏感性谱。通过严格的文献调查和各种代谢网络资源的基因网络分析,选择了病原体的药物靶点。在此基础上,筛选出 20 个靶点,从 PDB 中检索到部分药物靶点的 3D 结构,其他结构则通过计算预测得到。从药物数据库中检索到纳米先导物质如富勒烯 C60、氧化锌和氧化铜的结构。通过分子对接预测这些纳米先导物质对所有选定靶点的结合潜力。筛选出最佳对接构象,并通过初步的生物测定进行研究。本研究表明,大多数伤寒沙门氏菌分离株被发现为多药耐药菌(p<.05)。所选药物靶点的理论模型显示出较高的立体化学有效性。分子对接研究表明,与 ZnO 和 CuO 相比,富勒烯 C60 对药物靶点表现出更好的结合亲和力。初步的体外试验表明,100μg/L 的富勒烯 C60 具有显著的抑制活性,并且对这种纳米颗粒没有耐药性。本研究表明,富勒烯 C60 可以作为针对多药耐药性伤寒沙门氏菌主要药物靶点的潜在先导分子进行放大。

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