Morales Jorge, Kokkori Sofia, Weidauer Diana, Chapman Jarrod, Goltsman Eugene, Rokhsar Daniel, Grossman Arthur R, Nowack Eva C M
Department of Biology, Heinrich-Heine-Universität Düsseldorf, Universitätsstr. 1, 40225, Düsseldorf, Germany.
Plant Genome Group, DOE Joint Genome Institute, 2800 Mitchell Drive, 94598, Walnut Creek, CA, USA.
BMC Evol Biol. 2016 Nov 11;16(1):247. doi: 10.1186/s12862-016-0820-z.
Bacterial endosymbionts are found across the eukaryotic kingdom and profoundly impacted eukaryote evolution. In many endosymbiotic associations with vertically inherited symbionts, highly complementary metabolic functions encoded by host and endosymbiont genomes indicate integration of metabolic processes between the partner organisms. While endosymbionts were initially expected to exchange only metabolites with their hosts, recent evidence has demonstrated that also host-encoded proteins can be targeted to the bacterial symbionts in various endosymbiotic systems. These proteins seem to participate in regulating symbiont growth and physiology. However, mechanisms required for protein targeting and the specific endosymbiont targets of these trafficked proteins are currently unexplored owing to a lack of molecular tools that enable functional studies of endosymbiotic systems.
Here we show that the trypanosomatid Angomonas deanei, which harbors a β-proteobacterial endosymbiont, is readily amenable to genetic manipulation. Its rapid growth, availability of full genome and transcriptome sequences, ease of transfection, and high frequency of homologous recombination have allowed us to stably integrate transgenes into the A. deanei nuclear genome, efficiently generate null mutants, and elucidate protein localization by heterologous expression of a fluorescent protein fused to various putative targeting signals. Combining these novel tools with proteomic analysis was key for demonstrating the routing of a host-encoded protein to the endosymbiont, suggesting the existence of a specific endosymbiont-sorting machinery in A. deanei.
After previous reports from plants, insects, and a cercozoan amoeba we found here that also in A. deanei, i.e. a member of a fourth eukaryotic supergroup, host-encoded proteins can be routed to the bacterial endosymbiont. This finding adds further evidence to our view that the targeting of host proteins is a general strategy of eukaryotes to gain control over and interact with a bacterial endosymbiont. The molecular resources reported here establish A. deanei as a time and cost efficient reference system that allows for a rigorous dissection of host-symbiont interactions that have been, and are still being shaped over evolutionary time. We expect this system to greatly enhance our understanding of the biology of endosymbiosis.
细菌内共生体广泛存在于真核生物界,对真核生物的进化产生了深远影响。在许多与垂直遗传共生体的内共生关系中,宿主和内共生体基因组编码的高度互补的代谢功能表明伙伴生物体之间代谢过程的整合。虽然最初预计内共生体仅与其宿主交换代谢物,但最近的证据表明,在各种内共生系统中,宿主编码的蛋白质也可以靶向细菌共生体。这些蛋白质似乎参与调节共生体的生长和生理。然而,由于缺乏能够对内共生系统进行功能研究的分子工具,蛋白质靶向所需的机制以及这些运输蛋白的特定内共生体靶点目前尚未得到探索。
在这里,我们表明携带β-变形菌内共生体的锥虫Angomonas deanei易于进行基因操作。其快速生长、全基因组和转录组序列的可用性、易于转染以及高频率的同源重组,使我们能够将转基因稳定整合到A. deanei核基因组中,高效产生基因敲除突变体,并通过与各种假定靶向信号融合的荧光蛋白的异源表达来阐明蛋白质定位。将这些新工具与蛋白质组学分析相结合是证明宿主编码的蛋白质向共生体转运的关键,这表明A. deanei中存在一种特定的共生体分选机制。
继植物、昆虫和一种丝足虫变形虫的先前报道之后,我们在此发现,即在第四种真核生物超群的成员A. deanei中,宿主编码的蛋白质也可以转运到细菌内共生体中。这一发现进一步证明了我们的观点,即宿主蛋白的靶向是真核生物控制细菌内共生体并与其相互作用的一种普遍策略。这里报道的分子资源将A. deanei确立为一个省时且经济高效的参考系统,该系统能够对在进化过程中已经形成且仍在形成的宿主-共生体相互作用进行严格剖析。我们期望这个系统能极大地增进我们对内共生生物学的理解。