Wang Xiaosheng, Sun Qingrong
Department of Basic Medicine, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China.
School of Science, China Pharmaceutical University, Nanjing 211198, China.
Oncotarget. 2017 Jan 3;8(1):624-643. doi: 10.18632/oncotarget.13483.
Although the associations of p53 dysfunction, p53 interaction networks and oncogenesis have been widely explored, a systematic analysis of TP53 mutations and its related interaction networks in various types of human cancers is lacking. Our study explored the associations of TP53 mutations, gene expression, clinical outcomes, and TP53 interaction networks across 33 cancer types using data from The Cancer Genome Atlas (TCGA). We show that TP53 is the most frequently mutated gene in a number of cancers, and its mutations appear to be early events in cancer initiation. We identified genes potentially repressed by p53, and genes whose expression correlates significantly with TP53 expression. These gene products may be especially important nodes in p53 interaction networks in human cancers. This study shows that while TP53-truncating mutations often result in decreased TP53 expression, other non-truncating TP53 mutations result in increased TP53 expression in some cancers. Survival analyses in a number of cancers show that patients with TP53 mutations are more likely to have worse prognoses than TP53-wildtype patients, and that elevated TP53 expression often leads to poor clinical outcomes. We identified a set of candidate synthetic lethal (SL) genes for TP53, and validated some of these SL interactions using data from the Cancer Cell Line Project. These predicted SL genes are promising candidates for experimental validation and the development of personalized therapeutics for patients with TP53-mutated cancers.
尽管p53功能障碍、p53相互作用网络与肿瘤发生之间的关联已得到广泛研究,但仍缺乏对各类人类癌症中TP53突变及其相关相互作用网络的系统分析。我们的研究利用癌症基因组图谱(TCGA)的数据,探索了33种癌症类型中TP53突变、基因表达、临床结果以及TP53相互作用网络之间的关联。我们发现,TP53是多种癌症中最常发生突变的基因,其突变似乎是癌症起始过程中的早期事件。我们鉴定出了可能受p53抑制的基因,以及那些表达与TP53表达显著相关的基因。这些基因产物可能是人类癌症中p53相互作用网络中尤为重要的节点。这项研究表明,虽然TP53截短突变通常会导致TP53表达降低,但在某些癌症中,其他非截短型TP53突变会导致TP53表达增加。多种癌症的生存分析表明,与TP53野生型患者相比,TP53突变患者的预后更可能较差,而且TP53表达升高往往会导致不良临床结果。我们鉴定出了一组TP53的候选合成致死(SL)基因,并利用癌细胞系项目的数据验证了其中一些SL相互作用。这些预测的SL基因是进行实验验证以及为TP53突变癌症患者开发个性化疗法的有前景的候选基因。