• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

DiAna,一款用于基于对象的三维共定位和距离分析的ImageJ工具。

DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis.

作者信息

Gilles Jean-François, Dos Santos Marc, Boudier Thomas, Bolte Susanne, Heck Nicolas

机构信息

Sorbonne Universités, UPMC Univ Paris 06, CNRS, Core Facility - Institut de Biologie Paris Seine (IBPS), 75005 Paris, France.

Sorbonne Universités, UPMC Univ Paris 06, INSERM, CNRS, Neurosciences Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS), 75005 Paris, France.

出版信息

Methods. 2017 Feb 15;115:55-64. doi: 10.1016/j.ymeth.2016.11.016. Epub 2016 Nov 24.

DOI:10.1016/j.ymeth.2016.11.016
PMID:27890650
Abstract

We present a new plugin for ImageJ called DiAna, for Distance Analysis, which comes with a user-friendly interface. DiAna proposes robust and accurate 3D segmentation for object extraction. The plugin performs automated object-based co-localization and distance analysis. DiAna offers an in-depth analysis of co-localization between objects and retrieves 3D measurements including co-localizing volumes and surfaces of contact. It also computes the distribution of distances between objects in 3D. With DiAna, we furthermore introduce an original method, which allows for estimating the statistical significance of object co-localization. DiAna offers a complete and intuitive 3D image analysis tool for biologists.

摘要

我们展示了一款用于ImageJ的名为DiAna(距离分析)的新插件,它具有用户友好的界面。DiAna为对象提取提供强大且准确的三维分割。该插件执行基于对象的自动共定位和距离分析。DiAna对对象之间的共定位进行深入分析,并获取三维测量结果,包括共定位体积和接触表面。它还计算三维中对象之间距离的分布。借助DiAna,我们还引入了一种原创方法,可用于估计对象共定位的统计显著性。DiAna为生物学家提供了一个完整且直观的三维图像分析工具。

相似文献

1
DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis.DiAna,一款用于基于对象的三维共定位和距离分析的ImageJ工具。
Methods. 2017 Feb 15;115:55-64. doi: 10.1016/j.ymeth.2016.11.016. Epub 2016 Nov 24.
2
DeconvolutionLab2: An open-source software for deconvolution microscopy.反卷积实验室2:一款用于反卷积显微镜的开源软件。
Methods. 2017 Feb 15;115:28-41. doi: 10.1016/j.ymeth.2016.12.015. Epub 2017 Jan 3.
3
Super-resolution for everybody: An image processing workflow to obtain high-resolution images with a standard confocal microscope.人人皆可实现超分辨率:一种利用标准共聚焦显微镜获取高分辨率图像的图像处理工作流程。
Methods. 2017 Feb 15;115:17-27. doi: 10.1016/j.ymeth.2016.11.003. Epub 2016 Nov 5.
4
SpotitPy: a semi-automated tool for object-based co-localization of fluorescent labels in microscopy images.SpotitPy:一种用于显微镜图像中荧光标记物基于对象共定位的半自动工具。
BMC Bioinformatics. 2022 Oct 21;23(1):439. doi: 10.1186/s12859-022-04988-1.
5
MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells.MATtrack:一个基于MATLAB的定量图像分析平台,用于研究活细胞中的实时光转换荧光信号。
PLoS One. 2015 Oct 20;10(10):e0140209. doi: 10.1371/journal.pone.0140209. eCollection 2015.
6
4D in in vivo 2-photon laser scanning fluorescence microscopy with sample motion in 6 degrees of freedom.在具有 6 自由度样品运动的活体 2 光子激光扫描荧光显微镜中进行 4D 成像。
J Neurosci Methods. 2011 Aug 30;200(1):47-53. doi: 10.1016/j.jneumeth.2011.06.013. Epub 2011 Jun 23.
7
Quantitatively Assessing Co-Localization of Golgi Proteins by Distance Analysis Using the DiAna Software.
Methods Mol Biol. 2023;2557:263-274. doi: 10.1007/978-1-0716-2639-9_17.
8
Time-lapse microscopy of brain development.大脑发育的延时显微镜观察
Methods Cell Biol. 2004;76:207-35. doi: 10.1016/s0091-679x(04)76011-2.
9
Fluorescence colocalization microscopy analysis can be improved by combining object-recognition with pixel-intensity-correlation.通过将目标识别与像素强度相关性相结合,可以改进荧光共定位显微镜分析。
Biotechnol J. 2017 Jan;12(1). doi: 10.1002/biot.201600332. Epub 2016 Jul 26.
10
High-definition mapping of neural activity using voltage-sensitive dyes.利用电压敏感染料进行神经活动的高清映射。
Methods. 2000 Aug;21(4):349-72. doi: 10.1006/meth.2000.1024.

引用本文的文献

1
Stabilizing the retromer complex rescues synaptic dysfunction and endosomal trafficking deficits in an Alzheimer's disease mouse model.在阿尔茨海默病小鼠模型中,稳定逆转录复合物可挽救突触功能障碍和内体运输缺陷。
Acta Neuropathol Commun. 2025 Sep 10;13(1):190. doi: 10.1186/s40478-025-02096-8.
2
Submembrane liprin-α1 clusters spatially localize insulin granule fusion.膜下liprin-α1簇在空间上定位胰岛素颗粒融合。
J Cell Biol. 2025 Oct 6;224(10). doi: 10.1083/jcb.202410210. Epub 2025 Aug 28.
3
Type-I and -II collagens from bone and cartilage colocalize at the osteochondral cement line.
来自骨骼和软骨的I型和II型胶原蛋白在骨软骨结合线处共定位。
Bone Joint Res. 2025 Aug 27;14(8):735-744. doi: 10.1302/2046-3758.148.BJR-2024-0396.R1.
4
Crossover designation recruits condensin to reorganize the meiotic chromosome axis.交叉指定招募凝聚素以重组减数分裂染色体轴。
bioRxiv. 2025 Mar 11:2020.07.16.207068. doi: 10.1101/2020.07.16.207068.
5
Combining light-induced aggregation and biotin proximity labeling implicates endolysosomal proteins in early α-synuclein oligomerization.结合光诱导聚集和生物素邻近标记表明内溶酶体蛋白参与早期α-突触核蛋白寡聚化。
iScience. 2025 Jun 6;28(7):112823. doi: 10.1016/j.isci.2025.112823. eCollection 2025 Jul 18.
6
From Gene to Pathways: Understanding Novel Vps51 Variant and Its Cellular Consequences.从基因到信号通路:解读新型Vps51变体及其细胞效应
Int J Mol Sci. 2025 Jun 14;26(12):5709. doi: 10.3390/ijms26125709.
7
CCR2 recruits monocytes to the lung, while CX3CR1 modulates positioning of CD11c cells in the lymph node during pulmonary tuberculosis.CCR2将单核细胞募集到肺部,而CX3CR1在肺结核期间调节CD11c细胞在淋巴结中的定位。
mBio. 2025 Jul 9;16(7):e0123725. doi: 10.1128/mbio.01237-25. Epub 2025 Jun 11.
8
The Size and Localization of Ribeye and GluR2 in the Auditory Inner Hair Cell Synapse of C57BL/6 Mice Are Affected by Short-Pulse Corticosterone in a Sex-Dependent Manner.C57BL/6小鼠听觉内毛细胞突触中Ribeye和GluR2的大小及定位受短脉冲皮质酮的影响,且存在性别差异。
Brain Sci. 2025 Apr 24;15(5):441. doi: 10.3390/brainsci15050441.
9
Arabidopsis Produces Distinct Subpopulations of Extracellular Vesicles That Respond Differentially to Biotic Stress, Altering Growth and Infectivity of a Fungal Pathogen.拟南芥产生不同亚群的细胞外囊泡,这些囊泡对生物胁迫有不同反应,会改变一种真菌病原体的生长和感染性。
J Extracell Vesicles. 2025 May;14(5):e70090. doi: 10.1002/jev2.70090.
10
A conserved role for centriolar satellites in translation of centrosomal and ciliary proteins.中心粒卫星蛋白在中心体和纤毛蛋白翻译中的保守作用。
J Cell Biol. 2025 Aug 4;224(8). doi: 10.1083/jcb.202408042. Epub 2025 May 21.