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利用DNA条形码技术评估亚得里亚海南部柳叶鱼的形态学和物种组成

Morphology and Species Composition of Southern Adriatic Sea Leptocephali Evaluated Using DNA Barcoding.

作者信息

Anibaldi Alessandra, Benassi Franciosi Claudia, Massari Francesco, Tinti Fausto, Piccinetti Corrado, Riccioni Giulia

机构信息

Department of Biological, Geological and Environmental Sciences, University of Bologna, Laboratory of Marine Biology and Fishery, Fano (PU), Italy.

Department of Biological, Geological and Environmental Sciences, University of Bologna, Laboratory of Genetics & Genomics of Marine Resources and Environment (GenoDREAM), Ravenna, Italy.

出版信息

PLoS One. 2016 Nov 28;11(11):e0166137. doi: 10.1371/journal.pone.0166137. eCollection 2016.

Abstract

Leptocephali are the characteristic larvae of the superorder Elopomorpha that are difficult to identify at the species level. In this study, we used DNA barcoding (i.e. short genetic sequences of DNA used as unique species tags) coupled with classical taxonomic methods to identify leptocephali in the southern Adriatic Sea. This information will provide an assessment of the biodiversity of the eel larvae in this region. A total of 2,785 leptocephali were collected, and using external morphology were assigned to seven morphotypes: Ariosoma balearicum, Conger conger, Gnathophis mystax, Facciolella sp., Nettastoma melanurum, Dalophis imberbis and Chlopsis bicolor. Collectively, these seven morphotypes are considered to be a good proxy for the Anguilliformes community (the main order of the Elopomorpha) in the southern Adriatic Sea (to date, seven families and sixteen species have been recorded in this region). Interestingly, the higher number of G. mystax larvae collected suggests an increased abundance of this genus. To validate the morphological identifications, we sequenced 61 leptocephali (at a 655 bp fragment from the cytochrome oxidase subunit 1 mitochondrial region) and developed barcode vouchers for the seven morphotypes. Using genetic information from reference databases, we validated three of these morphotypes. Where reference sequences were unavailable, we generated barcodes for both adult and juvenile forms to provide additional genetic information. Using this integrated approach allowed us to characterize a new species of Facciolella in the Adriatic Sea for the first time. Moreover, we also revealed a lack of differentiation, at the species level, between G. mistax and G. bathytopos, a western Atlantic Ocean species. Our morphological and barcode data have been published in the Barcoding of the Adriatic Leptocephali database. This work represents the first contribution to a wider project that aims to create a barcode database to support the assessment of leptocephali diversity in the Mediterranean Sea.

摘要

柳叶鳗是海鲢总目的特征性幼体,在物种水平上难以鉴定。在本研究中,我们使用DNA条形码技术(即用作独特物种标签的短DNA遗传序列)结合经典分类方法来鉴定亚得里亚海南部的柳叶鳗。这些信息将对该区域鳗鱼幼体的生物多样性进行评估。总共收集了2785条柳叶鳗,并根据外部形态将它们分为七种形态类型:巴利阿里海鳝、康吉鳗、神秘吻康吉鳗、法氏鳗属物种、黑尾深海鼬鳚、长吻深海鼬鳚和双色叶鳗。总体而言,这七种形态类型被认为是亚得里亚海南部鳗鲡目(海鲢总目的主要目)群落的良好代表(迄今为止,该区域已记录到七个科和十六个物种)。有趣的是,收集到的神秘吻康吉鳗幼体数量较多,表明该属的丰度有所增加。为了验证形态学鉴定结果,我们对61条柳叶鳗进行了测序(针对线粒体细胞色素氧化酶亚基1区域的655 bp片段),并为这七种形态类型建立了条形码凭证。利用参考数据库中的遗传信息,我们验证了其中三种形态类型。在没有参考序列的情况下,我们为成体和幼体形式都生成了条形码,以提供额外的遗传信息。使用这种综合方法使我们首次鉴定出亚得里亚海中一种新的法氏鳗属物种。此外,我们还揭示了神秘吻康吉鳗与西大西洋物种深海吻康吉鳗在物种水平上缺乏分化。我们的形态学和条形码数据已发表在《亚得里亚海柳叶鳗条形码数据库》中。这项工作是一个更广泛项目的首次贡献,该项目旨在创建一个条形码数据库,以支持对地中海柳叶鳗多样性的评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8bdd/5125788/b31bee304188/pone.0166137.g001.jpg

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