Department of Health Management, School of Public Health, Harbin Medical University, No. 157 Baojian Road, NanGang District, Harbin, Heilongjiang Province, 150081, China.
Department of Neurosurgery, The Second Affiliated Hospital of Harbin Medical University, Harbin, 150086, China.
Mol Neurobiol. 2017 Dec;54(10):8203-8210. doi: 10.1007/s12035-016-0314-4. Epub 2016 Nov 29.
The aim of this study is to investigate the glucose metabolic status and its prognostic value in glioma. The Chinese Glioma Genome Atlas (CGGA), The Cancer Genome Atlas (TCGA), and GSE16011 datasets were used to develop the glucose-related signature. A cohort of 305 glioma samples with whole genome microarray expression data from the Chinese Glioma Genome Atlas database was included for discovery. TCGA and GSE16011 datasets were used for validation. Gene Set Enrichment Analysis (GSEA) and Cytoscape were used to explore the bioinformatic implication. GSEA revealed the biological process associated with the glucose-related signature. Cytoscape visualized the correlation analysis among the genes. We also collected the blood glucose information of patients with gliomas to analyze the association with tumor malignancy and patients' survival. In this study, we identified that glucose-related gene sets could distinguish the clinical and molecular features of gliomas, involved in the malignancy of gliomas. And then, we developed a glucose-related prognostic signature for patients with glioblastoma in the CGGA dataset, validated in other additional public datasets. GSEA illustrated that tumor with higher risk score of glucose-related signature could correlate with cell cycle phase. In addition, blood glucose concentration was associated with the malignancy of glioma and the survival of patients. These results might provide new view for the research of glioma malignancy and individual treatment. Our research provided important resources for future dissection of glucose metabolic role in glioma.
本研究旨在探讨脑胶质瘤的糖代谢状态及其预后价值。使用中国脑胶质瘤基因组图谱(CGGA)、癌症基因组图谱(TCGA)和 GSE16011 数据集开发了与葡萄糖相关的特征。纳入了来自 CGGA 数据库的 305 例具有全基因组微阵列表达数据的脑胶质瘤样本队列进行发现。TCGA 和 GSE16011 数据集用于验证。使用基因集富集分析(GSEA)和 Cytoscape 来探索生物信息学意义。GSEA 揭示了与葡萄糖相关特征相关的生物学过程。Cytoscape 可视化了基因之间的相关分析。我们还收集了脑胶质瘤患者的血糖信息,以分析其与肿瘤恶性程度和患者生存的关系。在这项研究中,我们确定了葡萄糖相关基因集可以区分脑胶质瘤的临床和分子特征,参与脑胶质瘤的恶性程度。然后,我们在 CGGA 数据集为胶质母细胞瘤患者开发了一个与葡萄糖相关的预后特征,并在其他额外的公共数据集中进行了验证。GSEA 表明,具有更高葡萄糖相关特征风险评分的肿瘤与细胞周期阶段相关。此外,血糖浓度与脑胶质瘤的恶性程度和患者的生存有关。这些结果可能为脑胶质瘤恶性程度和个体化治疗的研究提供新的视角。我们的研究为未来深入研究葡萄糖代谢在脑胶质瘤中的作用提供了重要资源。