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南极雷尼氏菌属,新属,新种,一种从南半球两个地理位置分离出的耐冷、利用D-氨基酸的厌氧菌。

Raineyella antarctica gen. nov., sp. nov., a psychrotolerant, d-amino-acid-utilizing anaerobe isolated from two geographic locations of the Southern Hemisphere.

作者信息

Pikuta Elena Vladimirovna, Menes Rodolfo Javier, Bruce Alisa Michelle, Lyu Zhe, Patel Nisha B, Liu Yuchen, Hoover Richard Brice, Busse Hans-Jürgen, Lawson Paul Alexander, Whitman William Barney

机构信息

Department of Mathematical, Computer and Natural Sciences, Athens State University, Athens, AL 35611, USA.

Cátedra de Microbiología, Facultad de Química y Facultad de Ciencias, UDELAR, 11800 Montevideo, Uruguay.

出版信息

Int J Syst Evol Microbiol. 2016 Dec;66(12):5529-5536. doi: 10.1099/ijsem.0.001552. Epub 2016 Oct 12.

Abstract

A Gram-stain-positive bacterium, strain LZ-22T, was isolated from a rhizosphere of moss Leptobryum sp. collected at the shore of Lake Zub in Antarctica. Cells were motile, straight or pleomorphic rods with sizes of 0.6-1.0×3.5-10 µm. The novel isolate was a facultatively anaerobic, catalase-positive, psychrotolerant mesophile. Growth was observed at 3-41 °C (optimum 24-28 °C), with 0-7 % (w/v) NaCl (optimum 0.25 %) and at pH 4.0-9.0 (optimum pH 7.8). The quinone system of strain LZ-22T possessed predominately menaquinone MK-9(H4). The genomic G+C content was 70.2 mol%. Strain 10J was isolated from a biofilm of sediment microbial fuel cell, in Uruguay and had 99 % 16S rRNA gene sequence similarity to strain LZ-22T. DNA-DNA-hybridization values of 84 % confirmed that both strains belonged to the same species. Both strains grew on sugars, proteinaceous compounds, and some amino- and organic acids. Strain LZ-22T uniquely grew on D-enantiomers of histidine and valine while neglecting growth on L-enantiomers. Both strains were sensitive to most of the tested antibiotics but resistant to tested nitrofurans and sulfanilamides. Phylogenetic analyses of the 16S rRNA gene sequences indicated that the strains were related to members of the family Propionibacteriaceae (~93-94 % 16S rRNA gene sequence similarity) with formation of a separate branch within the radiation of the genera Granulicoccus and Luteococcus. Based on phenotypic and genotypic characteristics, we propose the affiliation of both strains into a novel species of a new genus. The name Raineyella antarctica gen. nov., sp. nov. is proposed for the novel taxon with the type strain LZ-22T (=ATCC TSD-18T=DSM 100494T=JCM 30886T).

摘要

从南极洲祖布湖岸边采集的苔藓类植物细叶藓的根际土壤中分离出一株革兰氏阳性菌,菌株LZ-22T。细胞呈运动性,为直杆状或多形态杆状,大小为0.6 - 1.0×3.5 - 10 µm。该新分离菌株为兼性厌氧、过氧化氢酶阳性、耐冷嗜温菌。在3 - 41°C(最适温度24 - 28°C)、0 - 7%(w/v)NaCl(最适浓度0.25%)以及pH 4.0 - 9.0(最适pH 7.8)条件下可生长。菌株LZ-22T的醌系统主要含有甲基萘醌MK-9(H4)。基因组G+C含量为70.2 mol%。菌株10J从乌拉圭的沉积物微生物燃料电池生物膜中分离得到,其16S rRNA基因序列与菌株LZ-22T的相似性为99%。DNA-DNA杂交值为84%,证实这两个菌株属于同一物种。两个菌株都能利用糖类、蛋白质类化合物以及一些氨基酸和有机酸生长。菌株LZ-22T唯独能在组氨酸和缬氨酸的D-对映体上生长,而不能在L-对映体上生长。两个菌株对大多数测试抗生素敏感,但对测试的硝基呋喃类和磺胺类药物具有抗性。基于16S rRNA基因序列的系统发育分析表明,这些菌株与丙酸杆菌科成员相关(16S rRNA基因序列相似性约为93 - 94%),在颗粒球菌属和黄体球菌属的辐射范围内形成一个单独的分支。基于表型和基因型特征,我们提议将这两个菌株归入一个新属的一个新物种。将该新分类单元命名为南极雷尼氏菌(Raineyella antarctica),新属名,新种名。模式菌株为LZ-22T(=ATCC TSD-18T=DSM 100494T=JCM 30886T)。

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