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基于系统发育和群体的线粒体基因组变异研究方法并不支持其与男性不育症有关联。

Phylogenetic and population-based approaches to mitogenome variation do not support association with male infertility.

作者信息

Gómez-Carballa Alberto, Pardo-Seco Jacobo, Martinón-Torres Federico, Salas Antonio

机构信息

Unidade de Xenética, Departamento de Anatomía Patolóxica e Ciencias Forenses, Instituto de Ciencias Forenses, Facultade de Medicina, Universidade de Santiago de Compostela, Galicia, Spain.

GenPoB Research Group, Instituto de Investigaciones Sanitarias (IDIS), Hospital Clínico Universitario de Santiago, Santiago de Compostela, Galicia, Spain.

出版信息

J Hum Genet. 2017 Mar;62(3):361-371. doi: 10.1038/jhg.2016.130. Epub 2016 Dec 1.

DOI:10.1038/jhg.2016.130
PMID:27904151
Abstract

Infertility has a complex multifactorial etiology and a high prevalence worldwide. Several studies have pointed to variation in the mitochondrial DNA (mtDNA) molecule as a factor responsible for the different disease phenotypes related to infertility. We analyzed 53 mitogenomes of infertile males from Galicia (northwest Spain), and these haplotypes were meta-analyzed phylogenetically with 43 previously reported from Portugal. Taking advantage of the large amount of information available, we additionally carried out association tests between patient mtDNA single-nucleotide polymorphisms (mtSNPs) and haplogroups against Iberian matched controls retrieved from The 1000 Genomes Project and the literature. Phylogenetic and association analyses did not reveal evidence of association between mtSNPs/haplogroups and infertility. Ratios and patterns in patients of nonsynonymous/synonymous changes, and variation at homoplasmic, heteroplasmic and private variants, fall within expected values for healthy individuals. Moreover, the haplogroup background of patients was variable and fits well with patterns typically observed in healthy western Europeans. We did not find evidence of association of mtSNPs or haplogroups pointing to a role for mtDNA in male infertility. A thorough review of the literature on mtDNA variation and infertility revealed contradictory findings and methodological and theoretical problems that overall undermine previous positive findings.

摘要

不孕症病因复杂,具有多因素性,在全球范围内患病率较高。多项研究指出,线粒体DNA(mtDNA)分子的变异是导致与不孕症相关的不同疾病表型的一个因素。我们分析了来自西班牙西北部加利西亚地区的53名不育男性的线粒体基因组,并将这些单倍型与之前葡萄牙报告的43个单倍型进行了系统发育的荟萃分析。利用现有的大量信息,我们还对从千人基因组计划和文献中获取的伊比利亚匹配对照,开展了患者mtDNA单核苷酸多态性(mtSNP)和单倍群之间的关联测试。系统发育分析和关联分析均未发现mtSNP/单倍群与不孕症之间存在关联的证据。患者非同义/同义变化的比率和模式,以及纯合、杂合和私有变异的情况,均在健康个体的预期值范围内。此外,患者的单倍群背景具有多样性,与健康西欧人通常观察到的模式非常吻合。我们没有发现mtSNP或单倍群存在关联的证据,表明mtDNA在男性不育症中不起作用。对有关mtDNA变异与不孕症的文献进行全面回顾后发现,研究结果相互矛盾,且存在方法和理论问题,总体上削弱了之前的阳性研究结果。

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本文引用的文献

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HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.HaploGrep 2:高通量测序时代的线粒体单倍群分类
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The complete mitogenome of a 500-year-old Inca child mummy.一具拥有500年历史的印加儿童木乃伊的完整线粒体基因组。
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Mitochondrial DNA as a risk factor for false positives in case-control association studies.线粒体DNA作为病例对照关联研究中假阳性的一个风险因素。
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PLoS One. 2015 Mar 18;10(3):e0119242. doi: 10.1371/journal.pone.0119242. eCollection 2015.
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7
No evidence of association between common European mitochondrial DNA variants in Alzheimer, Parkinson, and migraine in the Spanish population.在西班牙人群中,没有证据表明常见的欧洲线粒体DNA变异与阿尔茨海默病、帕金森病和偏头痛之间存在关联。
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The saga of the many studies wrongly associating mitochondrial DNA with breast cancer.众多错误地将线粒体DNA与乳腺癌联系起来的研究的故事。
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