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通过微量接种法克服四氢叶酸依赖性O-脱甲基酶晶体中的半面孪晶问题。

Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

作者信息

Harada Ayaka, Sato Yukari, Kamimura Naofumi, Venugopalan Nagarajan, Masai Eiji, Senda Toshiya

机构信息

Department of Accelerator Science, School of High Energy Accelerator Science, SOKENDAI (The Graduate University for Advanced Studies), 1-1 Oho, Tsukuba, Ibaraki 305-0031, Japan.

Structural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan.

出版信息

Acta Crystallogr F Struct Biol Commun. 2016 Dec 1;72(Pt 12):897-902. doi: 10.1107/S2053230X16018665. Epub 2016 Nov 30.

Abstract

A tetrahydrofolate-dependent O-demethylase, LigM, from Sphingobium sp. SYK-6 was crystallized by the hanging-drop vapour-diffusion method. However, the obtained P321 or P321 crystals, which diffracted to 2.5-3.3 Å resolution, were hemihedrally twinned. To overcome the twinning problem, microseeding using P321/P321 crystals as microseeds was performed with optimization of the reservoir conditions. As a result, another crystal form was obtained. The newly obtained crystal diffracted to 2.5-3.0 Å resolution and belonged to space group P222, with unit-cell parameters a = 102.0, b = 117.3, c = 128.1 Å. The P222 crystals diffracted to better than 2.0 Å resolution after optimizing the cryoconditions. Phasing using the single anomalous diffraction method was successful at 3.0 Å resolution with a Pt-derivative crystal. This experience suggested that microseeding is an effective method to overcome the twinning problem, even when twinned crystals are utilized as microseeds.

摘要

从鞘氨醇单胞菌属菌株SYK-6中分离得到一种依赖四氢叶酸的O-脱甲基酶LigM,并通过悬滴气相扩散法进行结晶。然而,所获得的衍射分辨率为2.5 - 3.3 Å的P321或P321晶体为半面孪晶。为解决孪晶问题,以P321/P321晶体作为微种子进行微种子接种,并对结晶条件进行优化。结果,获得了另一种晶型。新获得的晶体衍射分辨率为2.5 - 3.0 Å,属于空间群P222,晶胞参数a = 102.0、b = 117.3、c = 128.1 Å。优化冷冻条件后,P222晶体的衍射分辨率优于2.0 Å。使用铂衍生物晶体,通过单波长反常散射法在3.0 Å分辨率下成功进行了相位分析。该经验表明,即使将孪晶用作微种子,微种子接种也是克服孪晶问题的有效方法。

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