Hemmerich Johannes, Rohe Peter, Kleine Britta, Jurischka Sarah, Wiechert Wolfgang, Freudl Roland, Oldiges Marco
Institute of Bio- and Geosciences-Biotechnology (IBG-1), Forschungszentrum Jülich, Jülich, Germany.
Bioeconomy Science Center (BioSC), Jülich, Germany.
Microb Cell Fact. 2016 Dec 7;15(1):208. doi: 10.1186/s12934-016-0604-6.
Technical bulk enzymes represent a huge market, and the extracellular production of such enzymes is favorable due to lowered cost for product recovery. Protein secretion can be achieved via general secretion (Sec) pathway. Specific sequences, signal peptides (SPs), are necessary to direct the target protein into the translocation machinery. For example, >150 Sec-specific SPs have been identified for Bacillus subtilis alone. As the best SP for a target protein of choice cannot be predicted a priori, screening of homologous SPs has been shown to be a powerful tool for different expression organisms. While SP libraries between closely related species were successfully applied to optimize recombinant protein secretion, this was not investigated for distantly related species. Therefore, in this study a Sec SP library from low-GC firmicutes B. subtilis is investigated to optimize protein secretion in high-GC actinobacterium Corynebacterium glutamicum using cutinase from Fusarium solani pisi as model protein.
A homologous SP library (~150 SP) for recombinant cutinase secretion in B. subtilis was successfully transferred to C. glutamicum as alternative secretion host. Cutinase secretion in C. glutamicum was quantified using an automated micro scale cultivation system for online growth monitoring, cell separation and cutinase activity determination. Secretion phenotyping results were correlated to those from a previous study, in which the same SP library was used to optimize secretion of the same cutinase but using B. subtilis as host. Strikingly, behavior of specific SP-cutinase combinations was changed dramatically between B. subtilis and C. glutamicum. Some SPs showed comparable cutinase secretion performances in both hosts, whereas other SPs caused diametrical extracellular cutinase activities.
The optimal production strain for a specific target protein of choice still cannot be designed in silico. Not only the best SP for a target protein has to be evaluated each time from scratch, the expression host also affects which SP is best. Thus, (heterologous) SP library screening using high-throughput methods is considered to be crucial to construct an optimal production strain for a target protein.
工业用酶市场巨大,由于产品回收成本降低,此类酶的胞外生产具有优势。蛋白质分泌可通过通用分泌(Sec)途径实现。特定序列,即信号肽(SPs),是将目标蛋白导入转运机制所必需的。例如,仅枯草芽孢杆菌就已鉴定出超过150种Sec特异性信号肽。由于无法事先预测哪种信号肽是目标蛋白的最佳选择,同源信号肽筛选已被证明是一种针对不同表达生物体的有效工具。虽然密切相关物种之间的信号肽文库已成功应用于优化重组蛋白分泌,但对于远缘物种尚未进行研究。因此,在本研究中,以来自低GC含量厚壁菌门枯草芽孢杆菌的Sec信号肽文库为研究对象,以来自豌豆镰刀菌的角质酶作为模型蛋白,优化高GC含量放线菌谷氨酸棒杆菌中的蛋白分泌。
用于枯草芽孢杆菌中重组角质酶分泌的同源信号肽文库(约150个信号肽)成功转移至谷氨酸棒杆菌作为替代分泌宿主。使用自动化微量培养系统对谷氨酸棒杆菌中的角质酶分泌进行定量,该系统可在线监测生长、进行细胞分离并测定角质酶活性。分泌表型分析结果与先前一项研究的结果相关,在该研究中使用相同的信号肽文库优化相同角质酶的分泌,但以枯草芽孢杆菌作为宿主。令人惊讶的是,特定信号肽-角质酶组合在枯草芽孢杆菌和谷氨酸棒杆菌之间的行为发生了巨大变化。一些信号肽在两种宿主中表现出相当的角质酶分泌性能,而其他信号肽则导致胞外角质酶活性截然不同。
仍然无法通过计算机设计出针对特定目标蛋白的最佳生产菌株。不仅每次都必须从头评估目标蛋白的最佳信号肽,表达宿主也会影响哪种信号肽是最佳的。因此,使用高通量方法进行(异源)信号肽文库筛选对于构建目标蛋白的最佳生产菌株至关重要。