红球菌属菌株WMMA185的全基因组序列，一种与海洋海绵相关的细菌
Complete Genome Sequence of Rhodococcus sp. Strain WMMA185, a Marine Sponge-Associated Bacterium.
作者信息
Adnani Navid, Braun Doug R, McDonald Bradon R, Chevrette Marc G, Currie Cameron R, Bugni Tim S
机构信息
Pharmaceutical Sciences Division, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
出版信息
Genome Announc. 2016 Dec 15;4(6):e01406-16. doi: 10.1128/genomeA.01406-16.
Abstract
The Rhodococcus strain WMMA185 was isolated from the marine sponge Chondrilla nucula as part of ongoing drug discovery efforts. Analysis of the 4.44-Mb genome provides information regarding interspecies interactions as pertains to regulation of secondary metabolism and natural product biosynthetic potentials.
摘要
作为正在进行的药物发现工作的一部分，红球菌菌株WMMA185是从海洋海绵核形软骨藻中分离出来的。对444万个碱基对的基因组进行分析，可提供有关种间相互作用的信息，这些信息与次级代谢的调控和天然产物生物合成潜力有关。
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本文引用的文献
1
The Pfam protein families database: towards a more sustainable future.Pfam蛋白质家族数据库：迈向更可持续的未来。
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.
2
KEGG as a reference resource for gene and protein annotation.KEGG作为基因和蛋白质注释的参考资源。
Nucleic Acids Res. 2016 Jan 4;44(D1):D457-62. doi: 10.1093/nar/gkv1070. Epub 2015 Oct 17.
3
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM).基因组到天然产物的次生代谢产物预测信息学（PRISM）。
Nucleic Acids Res. 2015 Nov 16;43(20):9645-62. doi: 10.1093/nar/gkv1012. Epub 2015 Oct 5.
4
Investigation of Interspecies Interactions within Marine Micromonosporaceae Using an Improved Co-Culture Approach.使用改进的共培养方法对海洋小单孢菌科内种间相互作用的研究。
Mar Drugs. 2015 Sep 24;13(10):6082-98. doi: 10.3390/md13106082.
5
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters.antiSMASH 3.0——用于生物合成基因簇基因组挖掘的综合资源。
Nucleic Acids Res. 2015 Jul 1;43(W1):W237-43. doi: 10.1093/nar/gkv437. Epub 2015 May 6.
6
Microbial communication leading to the activation of silent fungal secondary metabolite gene clusters.导致沉默真菌次级代谢物基因簇激活的微生物通讯。
Front Microbiol. 2015 Apr 20;6:299. doi: 10.3389/fmicb.2015.00299. eCollection 2015.
7
Membrane transport systems and the biodegradation potential and pathogenicity of genus Rhodococcus.红球菌属的膜转运系统、生物降解潜力及致病性
Front Physiol. 2014 Apr 4;5:133. doi: 10.3389/fphys.2014.00133. eCollection 2014.
8
Metabolite induction via microorganism co-culture: a potential way to enhance chemical diversity for drug discovery.微生物共培养诱导代谢物：一种增强药物发现化学多样性的潜在方法。
Biotechnol Adv. 2014 Nov 1;32(6):1180-204. doi: 10.1016/j.biotechadv.2014.03.001. Epub 2014 Mar 17.
9
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Infect Immun. 2014 May;82(5):1793-800. doi: 10.1128/IAI.01670-13. Epub 2014 Feb 18.
10
Pfam: the protein families database.Pfam：蛋白质家族数据库。
Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27.
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