Chater Keith F
Department of Molecular Microbiology, John Innes Centre, Norwich, UK.
F1000Res. 2016 Nov 30;5:2795. doi: 10.12688/f1000research.9534.1. eCollection 2016.
About 2,500 papers dated 2014-2016 were recovered by searching the PubMed database for , which are the richest known source of antibiotics. This review integrates around 100 of these papers in sections dealing with evolution, ecology, pathogenicity, growth and development, stress responses and secondary metabolism, gene expression, and technical advances. Genomic approaches have greatly accelerated progress. For example, it has been definitively shown that interspecies recombination of conserved genes has occurred during evolution, in addition to exchanges of some of the tens of thousands of non-conserved accessory genes. The closeness of the association of with plants, fungi, and insects has become clear and is reflected in the importance of regulators of cellulose and chitin utilisation in overall biology. Interestingly, endogenous cellulose-like glycans are also proving important in hyphal growth and in the clumping that affects industrial fermentations. Nucleotide secondary messengers, including cyclic di-GMP, have been shown to provide key input into developmental processes such as germination and reproductive growth, while late morphological changes during sporulation involve control by phosphorylation. The discovery that nitric oxide is produced endogenously puts a new face on speculative models in which regulatory Wbl proteins (peculiar to actinobacteria) respond to nitric oxide produced in stressful physiological transitions. Some dramatic insights have come from a new model system for developmental biology, , including molecular evidence of very close interplay in each of two pairs of regulatory proteins. An extra dimension has been added to the many complexities of the regulation of secondary metabolism by findings of regulatory crosstalk within and between pathways, and even between species, mediated by end products. Among many outcomes from the application of chromosome immunoprecipitation sequencing (ChIP-seq) analysis and other methods based on "next-generation sequencing" has been the finding that 21% of mRNA species lack leader sequences and conventional ribosome binding sites. Further technical advances now emerging should lead to continued acceleration of knowledge, and more effective exploitation, of these astonishing and critically important organisms.
通过搜索PubMed数据库,共检索到约2500篇2014 - 2016年间发表的论文,该数据库是已知最丰富的抗生素来源。本综述整合了其中约100篇论文,内容涉及进化、生态、致病性、生长与发育、应激反应与次级代谢、基因表达以及技术进展等方面。基因组学方法极大地加速了研究进程。例如,已明确表明在进化过程中除了数万个非保守辅助基因发生交换外,保守基因还发生了种间重组。[具体生物]与植物、真菌和昆虫的紧密联系已清晰显现,这体现在纤维素和几丁质利用调节因子在[具体生物]整体生物学中的重要性。有趣的是,内源性纤维素样聚糖在菌丝生长以及影响工业发酵的聚集过程中也被证明具有重要作用。包括环二鸟苷酸在内的核苷酸二级信使已被证明为发芽和生殖生长等发育过程提供关键输入,而孢子形成过程中的后期形态变化涉及磷酸化控制。一氧化氮内源性产生这一发现为推测模型带来了新面貌,在该模型中,调节性Wbl蛋白(放线菌特有的)对压力生理转变中产生的一氧化氮作出反应。一些重大见解来自于[具体生物]发育生物学的新模型系统,包括两对调节蛋白中每一对之间密切相互作用的分子证据。通过发现途径内和途径间甚至物种间由终产物介导的调节串扰,次级代谢调节的诸多复杂性又增加了一个维度。染色体免疫沉淀测序(ChIP - seq)分析及其他基于“新一代测序”方法的应用产生了许多成果,其中之一是发现[具体生物]21%的mRNA种类缺乏前导序列和传统核糖体结合位点。目前正在出现的进一步技术进展应会导致对这些惊人且至关重要的生物的认识持续加速,并得到更有效的利用。