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一种含有新型培养基的纸质设备在检测海地采集的水样中霍乱弧菌方面的应用。

Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti.

作者信息

Briquaire Romain, Colwell Rita R, Boncy Jacques, Rossignol Emmanuel, Dardy Aline, Pandini Isabelle, Villeval François, Machuron Jean-Louis, Huq Anwar, Rashed Shah, Vandevelde Thierry, Rozand Christine

机构信息

PAH - Les Pharmaciens Humanitaires, 84 rue de Charonne, 75011 Paris 11, France.

Institute for Advanced Computer Studies, University of Maryland College Park, College Park, MD 20742, USA; Department of Cell Biology and Molecular Genetics, Maryland Pathogen Research Institute, University of Maryland College Park, College Park, MD 20742, USA.

出版信息

J Microbiol Methods. 2017 Feb;133:23-31. doi: 10.1016/j.mimet.2016.12.014. Epub 2016 Dec 19.

DOI:10.1016/j.mimet.2016.12.014
PMID:28007529
Abstract

Cholera is now considered to be endemic in Haiti, often with increased incidence during rainy seasons. The challenge of cholera surveillance is exacerbated by the cost of sample collection and laboratory analysis. A diagnostic tool is needed that is low cost, easy-to-use, and able to detect and quantify Vibrio cholerae accurately in water samples within 18-24h, and perform reliably in remote settings lacking laboratory infrastructure and skilled staff. The two main objectives of this study were to develop and evaluate a new culture medium embedded in a new diagnostic tool (PAD for paper based analytical device) for detecting Vibrio cholerae from water samples collected in Haiti. The intent is to provide guidance for corrective action, such as chlorination, for water positive for V. cholerae epidemic strains. For detecting Vibrio cholerae, a new chromogenic medium was designed and evaluated as an alternative to thiosulfate citrate bile salts sucrose (TCBS) agar for testing raw water samples. Sensitivity and specificity of the medium were assessed using both raw and spiked water samples. The Vibrio cholerae chromogenic medium was proved to be highly selective against most of the cultivable bacteria in the water samples, without loss of sensitivity in detection of V. cholerae. Thus, reliability of this new culture medium for detection of V. cholerae in the presence of other Vibrio species in water samples offers a significant advantage. A new paper based device containing the new chromogenic medium previously evaluated was compared with reference methods for detecting V. cholerae from spiked water sample. The microbiological PAD specifications were evaluated in Haiti. More precisely, a total of 185 water samples were collected at five sites in Haiti, June 2014 and again in June 2015. With this new tool, three V. cholerae O1 and 17 V. cholerae non-O1/O139 strains were isolated. The presence of virulence-associated and regulatory genes, including ctxA, zot, ace, and toxR, was confirmed using multiplex PCR. The three V. cholerae O1 isolates were positive for three of the four virulence-associated and regulatory genes. Twelve of the V. cholerae non-O1/O139 isolates were found to carry toxR, but none were ctxA+, zot+, or ace+. However, six of the V. cholerae non-O1/O139 isolates were resistant to penicillin, ampicillin, trimethoprim/sulfamethoxazole, nalidixic acid, and ciprofloxacin. The paper based analytical device (PAD) provides advantages in that standard culture methods employing agar plates are not required. Also, intermediary isolation steps were not required, including transfer to selective growth media, hence these steps being omitted reduced time to results. Furthermore, experienced technical skills also were not required. Thus, PAD is well suited for resource-limited settings.

摘要

霍乱目前在海地被视为地方病,在雨季发病率往往会上升。样本采集和实验室分析的成本加剧了霍乱监测的挑战。需要一种低成本、易于使用、能够在18 - 24小时内准确检测和定量水样中霍乱弧菌、并在缺乏实验室基础设施和专业人员的偏远地区可靠运行的诊断工具。本研究的两个主要目标是开发并评估一种嵌入新诊断工具(基于纸的分析装置的PAD)中的新型培养基,用于检测从海地采集的水样中的霍乱弧菌。目的是为针对霍乱弧菌流行菌株呈阳性的水提供诸如氯化等纠正措施的指导。为了检测霍乱弧菌,设计并评估了一种新型显色培养基,作为测试原水样本时硫代硫酸盐柠檬酸盐胆盐蔗糖(TCBS)琼脂的替代品。使用原水样本和加标水样本评估该培养基的敏感性和特异性。事实证明,霍乱弧菌显色培养基对水样中的大多数可培养细菌具有高度选择性,在检测霍乱弧菌时不失敏感性。因此,这种新型培养基在水样中存在其他弧菌属的情况下检测霍乱弧菌的可靠性具有显著优势。将一种包含先前评估过的新型显色培养基的新型基于纸的装置与从加标水样中检测霍乱弧菌的参考方法进行比较。在海地对基于微生物的PAD规格进行了评估。更确切地说,2014年6月和2015年6月在海地的五个地点共采集了185份水样。使用这种新工具,分离出了3株霍乱弧菌O1和17株霍乱弧菌非O1/O139菌株。使用多重PCR确认了包括ctxA、zot、ace和toxR在内的毒力相关基因和调控基因是否存在。3株霍乱弧菌O1分离株在4个毒力相关和调控基因中有三个呈阳性。12株霍乱弧菌非O1/O139分离株被发现携带toxR,但均无ctxA+、zot+或ace+。然而其中6株霍乱弧菌非O1/O139分离株对青霉素、氨苄青霉素、甲氧苄啶/磺胺甲恶唑、萘啶酸和环丙沙星耐药。基于纸的分析装置(PAD)的优势在于不需要使用琼脂平板的标准培养方法。此外,也不需要中间分离步骤,包括转移到选择性生长培养基,因此省略这些步骤缩短了得出结果的时间。此外,也不需要专业技术技能。因此,PAD非常适合资源有限的环境。

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