26株霍乱弧菌分离株的全基因组序列
Whole-Genome Sequences of 26 Vibrio cholerae Isolates.
作者信息
Watve Samit S, Chande Aroon T, Rishishwar Lavanya, Mariño-Ramírez Leonardo, Jordan I King, Hammer Brian K
机构信息
School of the Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA.
Applied Bioinformatics Laboratory, Atlanta, Georgia, USA.
出版信息
Genome Announc. 2016 Dec 22;4(6):e01396-16. doi: 10.1128/genomeA.01396-16.
Abstract
The human pathogen Vibrio cholerae employs several adaptive mechanisms for environmental persistence, including natural transformation and type VI secretion, creating a reservoir for the spread of disease. Here, we report whole-genome sequences of 26 diverse V. cholerae isolates, significantly increasing the sequence diversity of publicly available V. cholerae genomes.
摘要
人类病原体霍乱弧菌采用多种适应机制在环境中持续存在，包括自然转化和VI型分泌，从而形成了疾病传播的储存库。在此，我们报告了26种不同霍乱弧菌分离株的全基因组序列，显著增加了公开可用的霍乱弧菌基因组的序列多样性。
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本文引用的文献
1
Independent Regulation of Type VI Secretion in Vibrio cholerae by TfoX and TfoY.
Cell Rep. 2016 May 3;15(5):951-958. doi: 10.1016/j.celrep.2016.03.092. Epub 2016 Apr 21.
2
Diversity of Clinical and Environmental Isolates of Vibrio cholerae in Natural Transformation and Contact-Dependent Bacterial Killing Indicative of Type VI Secretion System Activity.
Appl Environ Microbiol. 2016 Apr 18;82(9):2833-2842. doi: 10.1128/AEM.00351-16. Print 2016 May.
3
CytR Is a Global Positive Regulator of Competence, Type VI Secretion, and Chitinases in Vibrio cholerae.
PLoS One. 2015 Sep 24;10(9):e0138834. doi: 10.1371/journal.pone.0138834. eCollection 2015.
4
Clonal Dissemination of a Single Vibrio cholerae O1 Biotype El Tor Strain in Sistan-Baluchestan Province of Iran During 2013.
Curr Microbiol. 2015 Aug;71(2):163-9. doi: 10.1007/s00284-015-0806-x. Epub 2015 Apr 11.
5
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
6
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
7
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
8
PATRIC, the bacterial bioinformatics database and analysis resource.
Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
Clonal origins of Vibrio cholerae O1 El Tor strains, Papua New Guinea, 2009-2011.
Emerg Infect Dis. 2011 Nov;17(11):2063-5. doi: 10.3201/eid1711.110782.
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