Iwakawa Naoto, Morimoto Daichi, Walinda Erik, Sugase Kenji, Shirakawa Masahiro
Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku Katsura, Nishikyo-ku, Kyoto, 615-8510, Japan.
Department of Molecular and Cellular Physiology, Graduate School of Medicine, Kyoto University, Yoshida Konoe-cho, Sakyo-ku, Kyoto, 606-8501, Japan.
Biomol NMR Assign. 2017 Apr;11(1):81-84. doi: 10.1007/s12104-016-9724-5. Epub 2016 Dec 26.
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease that leads to movement disorders. In motor neurons of ALS patients, intracellular aggregates of superoxide dismutase 1 (SOD1) have often been observed. To elucidate the aggregation mechanism, it is important to analyze the folding equilibrium of SOD1 between folded and aggregation-prone unfolded states. However, in most cases, this folding equilibrium has been studied in dilute solution even though the aggregate formation occurs in a highly crowded intracellular environment. Indeed, a recent study reported that the folding stability of SOD1 decreased in an environment containing protein crowder molecules. To understand such a destabilization effect due to protein crowders, it is necessary to obtain more precise structural information on SOD1 in the presence of protein crowders. Here, we report the H, C, and N backbone resonance assignments of monomeric SOD1 in the absence and presence of the protein crowder lysozyme. The chemical shift differences caused by addition of lysozyme suggest that SOD1 associated with lysozyme via negatively charged surfaces. Based on the assigned chemical shifts, the presence of lysozyme has a limited influence on the secondary structure of SOD1. We anticipate that our assignments will provide an important basis for elucidation of the crowding-induced folding destabilization of SOD1.
肌萎缩侧索硬化症(ALS)是一种导致运动障碍的致命性神经退行性疾病。在ALS患者的运动神经元中,经常观察到超氧化物歧化酶1(SOD1)的细胞内聚集体。为了阐明聚集机制,分析SOD1在折叠态和易于聚集的未折叠态之间的折叠平衡非常重要。然而,在大多数情况下,即使聚集体形成发生在高度拥挤的细胞内环境中,这种折叠平衡也是在稀溶液中进行研究的。事实上,最近的一项研究报道,在含有蛋白质拥挤剂分子的环境中,SOD1的折叠稳定性降低。为了理解蛋白质拥挤剂引起的这种去稳定作用,有必要获得在蛋白质拥挤剂存在下SOD1更精确的结构信息。在此,我们报告了在不存在和存在蛋白质拥挤剂溶菌酶的情况下,单体SOD1的H、C和N主链共振归属。添加溶菌酶引起的化学位移差异表明,SOD1通过带负电荷的表面与溶菌酶结合。基于已归属的化学位移,溶菌酶的存在对SOD1的二级结构影响有限。我们预计,我们的归属将为阐明拥挤诱导的SOD1折叠去稳定化提供重要依据。