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引用本文的文献

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Validation of a yellow fever vaccine model using data from primary vaccination in children and adults, re-vaccination and dose-response in adults and studies with immunocompromised individuals.使用儿童和成人初次接种、成人再次接种和剂量反应以及免疫功能低下个体研究的数据验证黄热病疫苗模型。
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and Models to Study Mosquito-Borne Flavivirus Neuropathogenesis, Prevention, and Treatment.并建立模型来研究蚊媒黄病毒的神经发病机制、预防和治疗。
Front Cell Infect Microbiol. 2019 Jul 9;9:223. doi: 10.3389/fcimb.2019.00223. eCollection 2019.
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BMC Immunol. 2018 May 25;19(1):15. doi: 10.1186/s12865-018-0252-1.

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ILP-2 modeling and virtual screening of an FDA-approved library:a possible anticancer therapy.ILP-2 模型构建及 FDA 批准药物库虚拟筛选:一种潜在的抗癌疗法。
Turk J Med Sci. 2016 Jun 23;46(4):1135-43. doi: 10.3906/sag-1503-2.
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Discovery of Novel Inhibitors Targeting the Menin-Mixed Lineage Leukemia Interface Using Pharmacophore- and Docking-Based Virtual Screening.基于药效团和对接的虚拟筛选发现靶向 Menin-Mixed Lineage Leukemia 界面的新型抑制剂。
J Chem Inf Model. 2016 Sep 26;56(9):1847-55. doi: 10.1021/acs.jcim.6b00185. Epub 2016 Aug 24.
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Ligand-based virtual screen for the discovery of novel M5 inhibitor chemotypes.基于配体的虚拟筛选以发现新型M5抑制剂化学类型。
Bioorg Med Chem Lett. 2016 Sep 15;26(18):4487-4491. doi: 10.1016/j.bmcl.2016.07.071. Epub 2016 Jul 30.
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Design of efficient molecular organic light-emitting diodes by a high-throughput virtual screening and experimental approach.通过高通量虚拟筛选和实验方法设计高效的分子有机发光二极管。
Nat Mater. 2016 Oct;15(10):1120-7. doi: 10.1038/nmat4717. Epub 2016 Aug 8.
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Identification of Novel Vaccine Candidates against Campylobacter through Reverse Vaccinology.通过反向疫苗学鉴定空肠弯曲菌新型疫苗候选株。
J Immunol Res. 2016;2016:5715790. doi: 10.1155/2016/5715790. Epub 2016 Jun 16.
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Development of a full-length cDNA-derived enterovirus A71 vaccine candidate using reverse genetics technology.利用反向遗传学技术开发一种全长cDNA衍生的肠道病毒A71候选疫苗。
Antiviral Res. 2016 Aug;132:225-32. doi: 10.1016/j.antiviral.2016.06.014. Epub 2016 Jul 4.
7
Selection of Vaccine Candidates for Fish Pasteurellosis Using Reverse Vaccinology and an In Vitro Screening Approach.利用反向疫苗学和体外筛选方法选择鱼类巴斯德氏菌病的候选疫苗
Methods Mol Biol. 2016;1404:181-192. doi: 10.1007/978-1-4939-3389-1_12.
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Reverse Vaccinology: The Pathway from Genomes and Epitope Predictions to Tailored Recombinant Vaccines.反向疫苗学:从基因组和表位预测到定制重组疫苗的途径。
Methods Mol Biol. 2016;1403:87-106. doi: 10.1007/978-1-4939-3387-7_4.
9
Reverse vaccinology 2.0: Human immunology instructs vaccine antigen design.逆向疫苗学2.0:人类免疫学指导疫苗抗原设计。
J Exp Med. 2016 Apr 4;213(4):469-81. doi: 10.1084/jem.20151960. Epub 2016 Mar 28.
10
The Use of Reverse Vaccinology and Molecular Modeling Associated with Cell Proliferation Stimulation Approach to Select Promiscuous Epitopes from Schistosoma mansoni.利用反向疫苗学和分子建模结合细胞增殖刺激方法从曼氏血吸虫中筛选多聚表位
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基于常微分方程的数学建模:疫苗学的一种有前景的方法。

Mathematical modeling based on ordinary differential equations: A promising approach to vaccinology.

作者信息

Bonin Carla Rezende Barbosa, Fernandes Guilherme Cortes, Dos Santos Rodrigo Weber, Lobosco Marcelo

机构信息

a Postgraduate Program in Computational Modeling, Federal University of Juiz de Fora , Juiz de Fora , Brazil.

b Medical School, Presidente Antônio Carlos University , Juiz de Fora , Brazil.

出版信息

Hum Vaccin Immunother. 2017 Feb;13(2):484-489. doi: 10.1080/21645515.2017.1264774. Epub 2016 Dec 27.

DOI:10.1080/21645515.2017.1264774
PMID:28027002
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5328209/
Abstract

New contributions that aim to accelerate the development or to improve the efficacy and safety of vaccines arise from many different areas of research and technology. One of these areas is computational science, which traditionally participates in the initial steps, such as the pre-screening of active substances that have the potential to become a vaccine antigen. In this work, we present another promising way to use computational science in vaccinology: mathematical and computational models of important cell and protein dynamics of the immune system. A system of Ordinary Differential Equations represents different immune system populations, such as B cells and T cells, antigen presenting cells and antibodies. In this way, it is possible to simulate, in silico, the immune response to vaccines under development or under study. Distinct scenarios can be simulated by varying parameters of the mathematical model. As a proof of concept, we developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature. The model is generic enough to represent the action of other diseases or vaccines in the human immune system, such as dengue and Zika virus.

摘要

旨在加速疫苗开发或提高疫苗效力及安全性的新贡献源自许多不同的研究和技术领域。其中一个领域是计算科学,它传统上参与初始步骤,例如对有可能成为疫苗抗原的活性物质进行预筛选。在这项工作中,我们提出了在疫苗学中使用计算科学的另一种有前景的方法:免疫系统重要细胞和蛋白质动力学的数学和计算模型。常微分方程组代表不同的免疫系统群体,如B细胞和T细胞、抗原呈递细胞和抗体。通过这种方式,可以在计算机上模拟对正在开发或研究的疫苗的免疫反应。通过改变数学模型的参数可以模拟不同的情况。作为概念验证,我们开发了针对黄热病疫苗接种的免疫反应模型。与文献中可用的实验数据相比,我们的模拟显示出一致的结果。该模型具有足够的通用性,能够代表其他疾病或疫苗在人体免疫系统中的作用,如登革热和寨卡病毒。