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受限螺旋肽中分子内CH⋯π吸引介导的构象多态性

Intramolecular CH⋯π attraction mediated conformational polymorphism of constrained helical peptides.

作者信息

Sun Jinming, Tian Zi-You, Liu Jianbo, Wan Chuan, Dai Chuan, Liu Zhihong, Xing Yun, Wu Yujie, Hou Zhanfeng, Han Wei, Yin Feng, Ye Yuxin, Li Zigang

机构信息

State Key Laboratory of Chemical Oncogenomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School Shenzhen 518055 China

Pingshan Translational Medicine Center, Shenzhen Bay Laboratory Shenzhen 518118 China.

出版信息

Chem Sci. 2024 Aug 9;15(35):14264-72. doi: 10.1039/d4sc02545h.

Abstract

In nature, biochemical processes depend on polymorphism, a phenomenon by which discrete biomolecules can adopt specific conformations based on their environment. However, it is often difficult to explore the generation mechanism and achieve polymorphic control in artificial supramolecular assembly systems. In this work, we propose a feasible thought for exploring the transformation mechanism of polymorphism in peptide assembly from the perspective of thermodynamic regulation, which enables polymorphic composition to be limited by switchable intramolecular CH⋯π attraction within a certain temperature range. Combined with the density functional theory calculations, we obtained thermodynamic theoretical data supporting the conformation transition and the underlying polymorphism formation principle. Afterward, we properly designed the peptide to alter the probability of CH⋯π attraction occurring. Then, we selectively obtained a homogeneous morphological form with corresponding molecular conformation, which further demonstrated the important role of molecular conformational manipulation in polymorphism selection. This unique template-based strategy developed in this study may provide scientists with an additional line of thought to guide assembly paths in other polymorphic systems.

摘要

在自然界中,生物化学过程依赖于多态性,即离散生物分子可根据其所处环境采用特定构象的一种现象。然而,在人工超分子组装体系中,通常难以探究其生成机制并实现多态性控制。在这项工作中,我们从热力学调控的角度提出了一种可行的思路,用于探究肽组装中多态性的转变机制,这使得多态性组成在一定温度范围内受可切换的分子内CH⋯π吸引力限制。结合密度泛函理论计算,我们获得了支持构象转变和潜在多态性形成原理的热力学理论数据。随后,我们合理设计肽以改变CH⋯π吸引力发生的概率。然后,我们选择性地获得了具有相应分子构象的均一形态形式,这进一步证明了分子构象操纵在多态性选择中的重要作用。本研究中开发的这种独特的基于模板的策略可能为科学家提供另一种思路,以指导其他多态性体系中的组装路径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5953/11389456/878e094dcd3d/d4sc02545h-f1.jpg

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