Maddigan Natasha K, Bell Stephen G
Department of Chemistry, University of Adelaide, SA 5005, Australia.
Department of Chemistry, University of Adelaide, SA 5005, Australia.
Arch Biochem Biophys. 2017 Feb 1;615:15-21. doi: 10.1016/j.abb.2016.12.014. Epub 2016 Dec 31.
A self-sufficient CYP102 family encoding gene (Krac_9955) has been identified from the bacterium Ktedonobacter racemifer DSM44963 which belongs to the Chloroflexi phylum. The characterisation of the substrate range of this enzyme was hampered by low levels of production using E. coli. The yield and purity of the Krac9555 enzyme was improved using a codon optimised gene, the introduction of a tag and modification of the purification protocol. The heme domain was isolated and in vitro analysis of substrate binding and turnover was performed. Krac9955 was found to preferentially bind alkyl- and alkyloxy-benzoic acids (≥95% high spin, K < 3 μM) over saturated and unsaturated fatty acids. Unusually for a self-sufficient CYP102 family member Krac9955 showed low levels of NAD(P)H oxidation activity for all the substrates tested though product formation was observed for many. For nearly all substrates the preferred site of hydroxylation of Krac9955 was eight carbons away from the carboxylate group with certain reactions proceeding at ≥ 90% selectivity. Krac9955 differs from CYP102A1 (P450Bm3), and is the first self-sufficient member of the CYP102 family of P450 enzymes which is not optimised for fast fatty acid hydroxylation close to the ω-terminus.
已从属于绿弯菌门的消旋酮杆菌DSM44963中鉴定出一个自给自足的CYP102家族编码基因(Krac_9955)。使用大肠杆菌生产该酶的水平较低,阻碍了对其底物范围的表征。通过使用密码子优化的基因、引入标签和修改纯化方案,提高了Krac9555酶的产量和纯度。分离出了血红素结构域,并对底物结合和周转进行了体外分析。发现Krac9955优先结合烷基和烷氧基苯甲酸(≥95%高自旋,K<3μM),而不是饱和和不饱和脂肪酸。作为自给自足的CYP102家族成员,Krac9955不同寻常的是,尽管对许多测试底物都观察到了产物形成,但对所有测试底物的NAD(P)H氧化活性水平都很低。对于几乎所有底物,Kracs9955的首选羟基化位点是距离羧基八个碳原子的位置,某些反应的选择性≥90%。Krac9955与CYP102A1(P450Bm3)不同,是P450酶CYP102家族中第一个未针对靠近ω末端的快速脂肪酸羟基化进行优化的自给自足成员。