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具有负反馈和时间延迟的简单基因网络中的混沌与超混沌

Chaos and hyperchaos in simple gene network with negative feedback and time delays.

作者信息

Khlebodarova Tamara M, Kogai Vladislav V, Fadeev Stanislav I, Likhoshvai Vitaly A

机构信息

* Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, pr., Lavrentieva 10, Novosibirsk, 630090, Russia.

† Sobolev Institute of Mathematics, Siberian Branch, Russian Academy of Sciences, Prospect Koptyuga 4, Novosibirsk, 630090, Russia.

出版信息

J Bioinform Comput Biol. 2017 Apr;15(2):1650042. doi: 10.1142/S0219720016500426. Epub 2016 Nov 29.

Abstract

Today there are examples that prove the existence of chaotic dynamics at all levels of organization of living systems, except intracellular, although such a possibility has been theoretically predicted. The lack of experimental evidence of chaos generation at the intracellular level in vivo may indicate that during evolution the cell got rid of chaos. This work allows the hypothesis that one of the possible mechanisms for avoiding chaos in gene networks can be a negative evolutionary selection, which prevents fixation or realization of regulatory circuits, creating too mild, from the biological point of view, conditions for the emergence of chaos. It has been shown that one of such circuits may be a combination of negative autoregulation of expression of transcription factors at the level of their synthesis and degradation. The presence of such a circuit results in formation of multiple branches of chaotic solutions as well as formation of hyperchaos with equal and sufficiently low values of the delayed argument that can be implemented not only in eukaryotic, but in prokaryotic cells.

摘要

如今有实例证明,除细胞内水平外,在生命系统组织的各个层面都存在混沌动力学,尽管这一可能性已在理论上得到预测。体内细胞内水平产生混沌缺乏实验证据,这可能表明在进化过程中细胞摆脱了混沌状态。这项研究提出了一个假说,即基因网络中避免混沌的一种可能机制可能是负向进化选择,它会阻止那些从生物学角度看会创造出过于温和的混沌出现条件的调节回路的固定或实现。研究表明,这样的回路之一可能是转录因子在合成和降解水平上的负向自调节的组合。这种回路的存在会导致形成多个混沌解分支,以及在延迟参数值相等且足够低的情况下形成超混沌,这不仅可以在真核细胞中实现,也可以在原核细胞中实现。

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