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通过对帕兰吉佩泰沿海水域的DNA条形码分析对海鳗进行基因鉴定。

Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters.

作者信息

Peninal Samuel, Subramanian Janakiraman, Elavarasi Alaganatham, Kalaiselvam Murugaiyan

机构信息

Centre of Advanced Study in Marine Biology, Faculty of Marine Sciences, Annamalai University, Tamil Nadu, India.

出版信息

Genom Data. 2016 Dec 9;11:81-84. doi: 10.1016/j.gdata.2016.12.002. eCollection 2017 Mar.

DOI:10.1016/j.gdata.2016.12.002
PMID:28053872
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5198627/
Abstract

Anguilliformes, also known as "true eels", are an ecologically diverse group of predominantly marine origin whose members were easily recognized by their extremely elongated bodies with reduced cross-sectional areas and universal lack of pelvic fins. The Marine Eels were collected from landing centres of Parangipettai coastal waters and identified based on their morphometric and meristic characters. The newly recorded species were used for the barcoding analysis. Information on molecular taxonomy of marine eels was very meagre and hence, the present study was aimed to study the barcoding of marine eels which were present along the southeast coast of India. The cube of lateral muscle was exercised for DNA isolation followed by its amplification. Cluster IX 2.06 was used to align the nucleotide sequences (Thomson, 1997). The evolutionary history was inferred using the Neighbor-Joining method (Saitou and Nei, 1987). The evolutionary distances were computed using the Maximum Composite Likelihood method (Tamura et al., 2004). The barcodes sequences were submitted in NCBI (National centre for Biotechnological Information). The species within genera of Muraenidae, Muraenesocidae and Ophichthidae family were clustered in a same clade with high bootstrap value. The evolutionary relationships of six species were analyzed using neighbor joining method. This results of phylogenetic tree showed maximum genetic relatedness with the sequenced results which were submitted in gene bank.

摘要

鳗鲡目,也被称为“真鳗”,是一个生态多样的类群,主要起源于海洋,其成员很容易通过身体极度细长、横截面积减小且普遍没有腹鳍来识别。海鳗是从帕兰吉佩泰沿海水域的上岸中心收集的,并根据其形态测量和可数性状进行鉴定。新记录的物种用于条形码分析。关于海鳗分子分类学的信息非常稀少,因此,本研究旨在研究印度东南沿海海鳗的条形码。取侧肌方块进行DNA提取,随后进行扩增。使用Cluster IX 2.06对核苷酸序列进行比对(汤姆森,1997年)。使用邻接法(斋藤和内,1987年)推断进化历史。使用最大复合似然法(田村等人,2004年)计算进化距离。条形码序列提交至NCBI(美国国立生物技术信息中心)。海鳝科、海鳗科和蛇鳗科各属内的物种聚集在一个具有高自展值的同一分支中。使用邻接法分析了六个物种的进化关系。系统发育树的结果显示与提交至基因库的测序结果具有最大的遗传相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e6/5198627/11c1ba59eda8/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e6/5198627/11c1ba59eda8/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e6/5198627/11c1ba59eda8/gr1.jpg

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