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通过一种新的自适应加速分子动力学方法实现长时间原子动力学模拟。

Long-time atomistic dynamics through a new self-adaptive accelerated molecular dynamics method.

作者信息

Gao N, Yang L, Gao F, Kurtz R J, West D, Zhang S

机构信息

Institute of Modern Physics, Chinese Academy of Sciences, 73000 LanZhou, People's Republic of China. Pacific Northwest National Laboratory, P O Box 999, Richland, WA 99352, United States of America.

出版信息

J Phys Condens Matter. 2017 Apr 12;29(14):145201. doi: 10.1088/1361-648X/aa574b. Epub 2017 Jan 6.

DOI:10.1088/1361-648X/aa574b
PMID:28059774
Abstract

A self-adaptive accelerated molecular dynamics method is developed to model infrequent atomic-scale events, especially those events that occur on a rugged free-energy surface. Key in the new development is the use of the total displacement of the system at a given temperature to construct a boost-potential, which is slowly increased to accelerate the dynamics. The temperature is slowly increased to accelerate the dynamics. By allowing the system to evolve from one steady-state configuration to another by overcoming the transition state, this self-evolving approach makes it possible to explore the coupled motion of species that migrate on vastly different time scales. The migrations of single vacancy (V) and small He-V clusters, and the growth of nano-sized He-V clusters in Fe for times in the order of seconds are studied by this new method. An interstitial-assisted mechanism is first explored for the migration of a helium-rich He-V cluster, while a new two-component Ostwald ripening mechanism is suggested for He-V cluster growth.

摘要

开发了一种自适应加速分子动力学方法来模拟罕见的原子尺度事件,特别是那些发生在崎岖自由能表面上的事件。新方法的关键在于利用给定温度下系统的总位移来构建一个增强势,该势会缓慢增加以加速动力学。温度也会缓慢升高以加速动力学。通过允许系统通过克服过渡态从一种稳态构型演变为另一种稳态构型,这种自演化方法使得探索在截然不同的时间尺度上迁移的物种的耦合运动成为可能。利用这种新方法研究了铁中单个空位(V)和小氦 - 空位团簇的迁移以及纳米级氦 - 空位团簇在数秒量级时间内的生长。首先探索了富氦氦 - 空位团簇迁移的间隙辅助机制,同时提出了一种新的二元奥斯特瓦尔德熟化机制用于氦 - 空位团簇的生长。

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