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染色质结构在人类疟原虫基因调控中的作用

The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite.

作者信息

Batugedara Gayani, Lu Xueqing M, Bunnik Evelien M, Le Roch Karine G

机构信息

Department of Cell Biology and Neuroscience, University of California Riverside, Riverside, CA 92521, USA.

Department of Microbiology, Immunology & Molecular Genetics, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA.

出版信息

Trends Parasitol. 2017 May;33(5):364-377. doi: 10.1016/j.pt.2016.12.004. Epub 2017 Jan 5.

DOI:10.1016/j.pt.2016.12.004
PMID:28065669
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5410391/
Abstract

The human malaria parasite, Plasmodium falciparum, depends on a coordinated regulation of gene expression for development and propagation within the human host. Recent developments suggest that gene regulation in the parasite is largely controlled by epigenetic mechanisms. Here, we discuss recent advancements contributing to our understanding of the mechanisms controlling gene regulation in the parasite, including nucleosome landscape, histone modifications, and nuclear architecture. In addition, various processes involved in regulation of parasite-specific genes and gene families are examined. Finally, we address the use of epigenetic processes as targets for novel antimalarial therapies. Collectively, these topics highlight the unique biology of P. falciparum, and contribute to our understanding of mechanisms regulating gene expression in this deadly parasite.

摘要

人类疟原虫恶性疟原虫在人类宿主体内的发育和繁殖依赖于基因表达的协调调控。最近的研究进展表明,该寄生虫中的基因调控在很大程度上受表观遗传机制控制。在此,我们讨论了有助于我们理解该寄生虫基因调控机制的最新进展,包括核小体图谱、组蛋白修饰和核结构。此外,还研究了参与寄生虫特异性基因和基因家族调控的各种过程。最后,我们阐述了将表观遗传过程作为新型抗疟疗法靶点的应用。总体而言,这些主题突出了恶性疟原虫独特的生物学特性,并有助于我们理解这种致命寄生虫中基因表达的调控机制。

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引用本文的文献

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GCN5 Is a Master Regulator of Gene Expression in the Malaria Parasite .GCN5是疟原虫基因表达的主要调节因子。
Cells. 2025 Jun 10;14(12):876. doi: 10.3390/cells14120876.
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Size-dependent enhancement of gene expression by Plasmodium 5'UTR introns.大小依赖的疟原虫 5'UTR 内含子增强基因表达。
Parasit Vectors. 2024 May 27;17(1):238. doi: 10.1186/s13071-024-06319-0.
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MYST regulates DNA repair and forms a NuA4-like complex in the malaria parasite .MYST调节DNA修复并在疟原虫中形成类似NuA4的复合物。

本文引用的文献

1
Mapping the 3D genome: Aiming for consilience.绘制 3D 基因组图谱:追求一致性。
Nat Rev Mol Cell Biol. 2016 Nov 21;17(12):741-742. doi: 10.1038/nrm.2016.151.
2
Recent advances in malaria genomics and epigenomics.疟疾基因组学和表观基因组学的最新进展
Genome Med. 2016 Sep 7;8(1):92. doi: 10.1186/s13073-016-0343-7.
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The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum.人类疟原虫恶性疟原虫的mRNA结合蛋白质组。
mSphere. 2024 Apr 23;9(4):e0014024. doi: 10.1128/msphere.00140-24. Epub 2024 Apr 2.
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Impact of infection on DNA methylation of circulating immune cells.感染对循环免疫细胞DNA甲基化的影响。
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Decrypting the complexity of the human malaria parasite biology through systems biology approaches.通过系统生物学方法解析人类疟原虫生物学的复杂性。
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6
Characterization of the dual role of Plasmodium falciparum DNA methyltransferase in regulating transcription and translation.疟原虫 DNA 甲基转移酶在转录和翻译调控中的双重作用的表征。
Nucleic Acids Res. 2023 May 8;51(8):3918-3933. doi: 10.1093/nar/gkad248.
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PfSET2 Is Involved in Genome Organization of Gene Family in Plasmodium falciparum.PfSET2 参与恶性疟原虫基因家族的基因组组织。
Microbiol Spectr. 2023 Feb 14;11(1):e0389122. doi: 10.1128/spectrum.03891-22. Epub 2023 Jan 5.
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Epigenetic and Epitranscriptomic Gene Regulation in and How We Can Use It against Malaria.和中的表观遗传和转录后基因调控以及我们如何利用它来对抗疟疾。
Genes (Basel). 2022 Sep 27;13(10):1734. doi: 10.3390/genes13101734.
9
Drug Resistance Genes and Co-Expression During Artemether-Lumefantrine Therapy.蒿甲醚-本芴醇治疗期间的耐药基因与共表达
Front Pharmacol. 2022 May 24;13:868723. doi: 10.3389/fphar.2022.868723. eCollection 2022.
10
Genome-wide landscape of ApiAP2 transcription factors reveals a heterochromatin-associated regulatory network during Plasmodium falciparum blood-stage development.全基因组 ApiAP2 转录因子景观揭示了疟原虫血期发育过程中与异染色质相关的调控网络。
Nucleic Acids Res. 2022 Apr 8;50(6):3413-3431. doi: 10.1093/nar/gkac176.
Genome Biol. 2016 Jul 5;17(1):147. doi: 10.1186/s13059-016-1014-0.
4
Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite.疟原虫红细胞内发育周期中组蛋白修饰的动态与组合图谱
J Proteome Res. 2016 Aug 5;15(8):2787-801. doi: 10.1021/acs.jproteome.6b00366. Epub 2016 Jun 24.
5
Global selection of Plasmodium falciparum virulence antigen expression by host antibodies.宿主抗体对恶性疟原虫毒力抗原表达的全球选择
Sci Rep. 2016 Jan 25;6:19882. doi: 10.1038/srep19882.
6
The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences.恶性疟原虫的核小体图谱揭示了染色质结构和调控序列的动态变化。
Nucleic Acids Res. 2016 Mar 18;44(5):2110-24. doi: 10.1093/nar/gkv1214. Epub 2015 Nov 17.
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The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages.恶性疟原虫血液阶段中,PfAlba1 RNA结合蛋白是翻译时间的重要调节因子。
Genome Biol. 2015 Sep 28;16:212. doi: 10.1186/s13059-015-0771-5.
8
Control of Chromatin Structure by Long Noncoding RNA.长链非编码RNA对染色质结构的调控
Trends Cell Biol. 2015 Oct;25(10):623-632. doi: 10.1016/j.tcb.2015.07.002.
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DNA-guided establishment of nucleosome patterns within coding regions of a eukaryotic genome.DNA引导的真核基因组编码区内核小体模式的建立。
Genome Res. 2015 Nov;25(11):1727-38. doi: 10.1101/gr.188516.114. Epub 2015 Sep 1.
10
Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.结构化核小体指纹图谱能够对调控区域内的染色质结构进行高分辨率映射。
Genome Res. 2015 Nov;25(11):1757-70. doi: 10.1101/gr.192294.115. Epub 2015 Aug 27.