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模式菌株——一种岩石放线菌的高质量基因组草图及修订描述。

High quality draft genome of type strain a rock actinobacterium, and emended description of .

作者信息

Nouioui Imen, Göker Markus, Carro Lorena, Montero-Calasanz Maria Del Carmen, Rohde Manfred, Woyke Tanja, Kyrpides Nikos C, Klenk Hans-Peter

机构信息

School of Biology, Newcastle University, Newcastle upon Tyne, NE1 7RY UK.

Leibniz Institute DSMZ, Inhoffenstr. 7 B, 38124 Braunschweig, Germany.

出版信息

Stand Genomic Sci. 2017 Jan 6;12:4. doi: 10.1186/s40793-016-0216-0. eCollection 2017.

DOI:10.1186/s40793-016-0216-0
PMID:28074122
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5217420/
Abstract

DLS-10 isolated from rock in Korea, is one of the four type strains of the genus In this study, we describe the high quality draft genome of DLS-10 and its annotation. A summary of phenotypic data collected from previously published studies was also included. The genome of strain DLS-10 presents a size of 5.82 Mpb, 5100 protein coding genes, and a C + G content of 68.9%. Based on the genome analysis, emended description of in terms of G + C content was also proposed.

摘要

从韩国岩石中分离出的DLS-10是该属的四个模式菌株之一。在本研究中,我们描述了DLS-10的高质量基因组草图及其注释。还包括了从先前发表的研究中收集的表型数据总结。菌株DLS-10的基因组大小为5.82兆碱基对,有5100个蛋白质编码基因,G+C含量为68.9%。基于基因组分析,还提出了关于该属G+C含量的修订描述。

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2
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3
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