Department of Physics, Sharif University of Technology, P.O. Box 11155-9161, Tehran, Iran.
Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Lorentzweg 1, 2628 CJ Delft, the Netherlands.
Phys Rev E. 2016 Dec;94(6-1):062407. doi: 10.1103/PhysRevE.94.062407. Epub 2016 Dec 19.
Using analytical approach and Monte Carlo (MC) simulations, we study the elastic behavior of the intrinsically twisted elastic ribbons with bending anisotropy, such as double-stranded DNA (dsDNA), in two-dimensional (2D) confinement. We show that, due to the bending anisotropy, the persistence length of dsDNA in 2D conformations is always greater than three-dimensional (3D) conformations. This result is in consistence with the measured values for DNA persistence length in 2D and 3D in equal biological conditions. We also show that in two dimensions, an anisotropic, intrinsically twisted polymer exhibits an implicit twist-bend coupling, which leads to the transient curvature increasing with a half helical turn periodicity along the bent polymer.
利用解析方法和蒙特卡罗(MC)模拟,我们研究了具有弯曲各向异性的固有扭曲弹性带的弹性行为,例如双链 DNA(dsDNA)在二维(2D)约束下的行为。我们表明,由于弯曲各向异性,dsDNA 在 2D 构象中的持久长度始终大于 3D 构象。这一结果与在相同生物条件下测量到的 DNA 在 2D 和 3D 中的持久长度值一致。我们还表明,在二维空间中,各向异性的固有扭曲聚合物表现出隐含的扭曲-弯曲耦合,这导致沿弯曲聚合物以半螺旋周期周期性增加的瞬态曲率。