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临床前II型肺动脉高压的小鼠全基因组关联研究确定了表皮生长因子受体。

Mouse Genome-Wide Association Study of Preclinical Group II Pulmonary Hypertension Identifies Epidermal Growth Factor Receptor.

作者信息

Kelly Neil J, Radder Josiah E, Baust Jeffrey J, Burton Christine L, Lai Yen-Chun, Potoka Karin C, Agostini Brittani A, Wood John P, Bachman Timothy N, Vanderpool Rebecca R, Dandachi Nadine, Leme Adriana S, Gregory Alyssa D, Morris Alison, Mora Ana L, Gladwin Mark T, Shapiro Steven D

机构信息

1 Department of Medicine.

2 Vascular Medicine Institute, and.

出版信息

Am J Respir Cell Mol Biol. 2017 Apr;56(4):488-496. doi: 10.1165/rcmb.2016-0176OC.

Abstract

Pulmonary hypertension (PH) is associated with features of obesity and metabolic syndrome that translate to the induction of PH by chronic high-fat diet (HFD) in some inbred mouse strains. We conducted a genome-wide association study (GWAS) to identify candidate genes associated with susceptibility to HFD-induced PH. Mice from 36 inbred and wild-derived strains were fed with regular diet or HFD for 20 weeks beginning at 6-12 weeks of age, after which right ventricular (RV) and left ventricular (LV) end-systolic pressure (ESP) and maximum pressure (MaxP) were measured by cardiac catheterization. We tested for association of RV MaxP and RV ESP and identified genomic regions enriched with nominal associations to both of these phenotypes. We excluded genomic regions if they were also associated with LV MaxP, LV ESP, or body weight. Genes within significant regions were scored based on the shortest-path betweenness centrality, a measure of network connectivity, of their human orthologs in a gene interaction network of human PH-related genes. WSB/EiJ, NON/ShiLtJ, and AKR/J mice had the largest increases in RV MaxP after high-fat feeding. Network-based scoring of GWAS candidates identified epidermal growth factor receptor (Egfr) as having the highest shortest-path betweenness centrality of GWAS candidates. Expression studies of lung homogenate showed that EGFR expression is increased in the AKR/J strain, which developed a significant increase in RV MaxP after high-fat feeding as compared with C57BL/6J, which did not. Our combined GWAS and network-based approach adds evidence for a role for Egfr in murine PH.

摘要

肺动脉高压(PH)与肥胖和代谢综合征的特征相关,在某些近交系小鼠品系中,这些特征可通过慢性高脂饮食(HFD)诱导PH。我们进行了一项全基因组关联研究(GWAS),以确定与HFD诱导的PH易感性相关的候选基因。36个近交系和野生衍生品系的小鼠在6 - 12周龄开始分别喂食常规饮食或HFD 20周,之后通过心脏导管插入术测量右心室(RV)和左心室(LV)的收缩末期压力(ESP)和最大压力(MaxP)。我们测试了RV MaxP和RV ESP的关联性,并确定了富含与这两种表型名义关联的基因组区域。如果这些基因组区域也与LV MaxP、LV ESP或体重相关,则将其排除。基于人类PH相关基因的基因相互作用网络中其人类直系同源基因的网络连通性度量——最短路径介数中心性,对显著区域内的基因进行评分。高脂喂养后,WSB/EiJ、NON/ShiLtJ和AKR/J小鼠的RV MaxP增加幅度最大。基于网络的GWAS候选基因评分确定表皮生长因子受体(Egfr)在GWAS候选基因中具有最高的最短路径介数中心性。肺匀浆的表达研究表明,与未出现显著变化的C57BL/6J相比,高脂喂养后RV MaxP显著增加的AKR/J品系中EGFR表达增加。我们结合GWAS和基于网络的方法为Egfr在小鼠PH中的作用提供了证据。

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