Moiseyev Nimrod
Schulich Faculty of Chemistry, Institute of Solid State, and Faculty of Physics, Technion-Israel Institute of Technology, Haifa 32000, Israel.
J Chem Phys. 2017 Jan 14;146(2):024101. doi: 10.1063/1.4973559.
Autoionization of molecular systems occurs in diatomic molecules and in small biochemical systems. Quantum chemistry packages enable calculation of complex potential energy surfaces (CPESs). The imaginary part of the CPES is associated with the autoionization decay rate, which is a function of the molecular structure. Molecular dynamics simulations, within the framework of the Born-Oppenheimer approximation, require the definition of a force field. The ability to calculate the forces on the nuclei in bio-systems when autoionization takes place seems to rely on an understanding of radiative damages in RNA and DNA arising from the release of slow moving electrons which have long de Broglie wavelengths. This work addresses calculation of the real forces on the nuclei moving on the CPES. By using the transformation of the time-dependent Schrödinger equation, previously used by Madelung, we proved that the classical forces on nuclei moving on the CPES correlated with the gradient of the real part of the CPES. It was proved that the force on the nuclei of the metastable molecules is time independent although the probability to detect metastable molecules exponentially decays. The classical force is obtained from the transformed Schrödinger equation when ℏ=0 and the Schrödinger equation is reduced to the classical (Newtonian) equations of motion. The forces on the nuclei regardless on what potential energy surface they move (parent CPES or product real PESs) vary in time due to the autoionization process.
分子体系的自电离发生在双原子分子和小型生化体系中。量子化学软件包能够计算复杂势能面(CPESs)。CPES的虚部与自电离衰减率相关,自电离衰减率是分子结构的函数。在玻恩-奥本海默近似框架内的分子动力学模拟需要定义一个力场。当发生自电离时,计算生物体系中原子核上的力的能力似乎依赖于对RNA和DNA中由具有长德布罗意波长的慢移动电子释放所引起的辐射损伤的理解。这项工作致力于计算在CPES上移动的原子核上的实际力。通过使用马德隆之前使用的含时薛定谔方程的变换,我们证明了在CPES上移动的原子核上的经典力与CPES实部的梯度相关。已证明亚稳分子原子核上的力与时间无关,尽管检测到亚稳分子的概率呈指数衰减。当ℏ = 0且薛定谔方程简化为经典(牛顿)运动方程时,经典力从变换后的薛定谔方程中获得。由于自电离过程,无论原子核在何种势能面(母CPES或产物实PESs)上移动,其受到的力都会随时间变化。