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Regulatory elements in molecular networks.
Wiley Interdiscip Rev Syst Biol Med. 2017 May;9(3). doi: 10.1002/wsbm.1374. Epub 2017 Jan 17.
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Advances in analysis of transcriptional regulatory networks.
Wiley Interdiscip Rev Syst Biol Med. 2011 Jan-Feb;3(1):21-35. doi: 10.1002/wsbm.105.
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Computational approaches for the identification of cancer genes and pathways.
Wiley Interdiscip Rev Syst Biol Med. 2017 Jan;9(1). doi: 10.1002/wsbm.1364. Epub 2016 Nov 11.
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Engineering of synthetic gene circuits for (re-)balancing physiological processes in chronic diseases.
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Network biology: a direct approach to study biological function.
Wiley Interdiscip Rev Syst Biol Med. 2011 Jul-Aug;3(4):379-91. doi: 10.1002/wsbm.134. Epub 2010 Dec 31.
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Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
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7
Genome-wide analysis of protein-DNA interactions.
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Transcriptional regulatory elements in the human genome.
Annu Rev Genomics Hum Genet. 2006;7:29-59. doi: 10.1146/annurev.genom.7.080505.115623.
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Genome-scale metabolic models applied to human health and disease.
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引用本文的文献

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Hidden secrets of the cancer genome: unlocking the impact of non-coding mutations in gene regulatory elements.
Cell Mol Life Sci. 2024 Jun 20;81(1):274. doi: 10.1007/s00018-024-05314-z.
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The distribution of fitness effects during adaptive walks using a simple genetic network.
PLoS Genet. 2024 May 24;20(5):e1011289. doi: 10.1371/journal.pgen.1011289. eCollection 2024 May.
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Exploring the secretome of ATCC 13032.
Front Bioeng Biotechnol. 2024 Feb 13;12:1348184. doi: 10.3389/fbioe.2024.1348184. eCollection 2024.
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DeepRegFinder: deep learning-based regulatory elements finder.
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MAE-seq refines regulatory elements across the genome.
Nucleic Acids Res. 2024 Jan 25;52(2):e9. doi: 10.1093/nar/gkad1129.
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Genome-wide analysis of the U-box E3 ubiquitin ligase family role in drought tolerance in sesame ( L.).
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SARS-CoV-2 infection severity and mortality is modulated by repeat-mediated regulation of alternative splicing.
Microbiol Spectr. 2023 Aug 21;11(5):e0135123. doi: 10.1128/spectrum.01351-23.
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Associations of meditation with telomere dynamics: a case-control study in healthy adults.
Front Psychol. 2023 Jul 14;14:1222863. doi: 10.3389/fpsyg.2023.1222863. eCollection 2023.
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Large-scale integration of DNA methylation and gene expression array platforms identifies both and relationships.
Epigenetics. 2022 Dec;17(12):1753-1773. doi: 10.1080/15592294.2022.2079293. Epub 2022 Jun 13.

本文引用的文献

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CREBBP Inactivation Promotes the Development of HDAC3-Dependent Lymphomas.
Cancer Discov. 2017 Jan;7(1):38-53. doi: 10.1158/2159-8290.CD-16-0975. Epub 2016 Oct 12.
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Genome-wide mapping and analysis of chromosome architecture.
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Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution.
Nat Genet. 2016 Oct;48(10):1193-203. doi: 10.1038/ng.3646. Epub 2016 Aug 15.
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Applying CRISPR-Cas9 tools to identify and characterize transcriptional enhancers.
Nat Rev Mol Cell Biol. 2016 Sep;17(9):597-604. doi: 10.1038/nrm.2016.79. Epub 2016 Jul 6.
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Genetic dissection of the α-globin super-enhancer in vivo.
Nat Genet. 2016 Aug;48(8):895-903. doi: 10.1038/ng.3605. Epub 2016 Jul 4.
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PEDLA: predicting enhancers with a deep learning-based algorithmic framework.
Sci Rep. 2016 Jun 22;6:28517. doi: 10.1038/srep28517.
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Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality.
Cell. 2016 May 19;165(5):1120-1133. doi: 10.1016/j.cell.2016.04.029. Epub 2016 May 5.
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Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes.
Mol Metab. 2016 Jan 11;5(3):233-244. doi: 10.1016/j.molmet.2016.01.002. eCollection 2016 Mar.

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