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空肠弯曲菌81116中dTDP-Fuc3N和dTDP-Qui3N生物合成途径的表征

Characterization of the dTDP-Fuc3N and dTDP-Qui3N biosynthetic pathways in Campylobacter jejuni 81116.

作者信息

Li Zack Z, Riegert Alexander S, Goneau Marie-France, Cunningham Anna M, Vinogradov Evgeny, Li Jianjun, Schoenhofen Ian C, Thoden James B, Holden Hazel M, Gilbert Michel

机构信息

National Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.

Department of Biochemistry, University of Wisconsin, 440 Henry Mall, Madison, WI, USA.

出版信息

Glycobiology. 2017 Apr 1;27(4):358-369. doi: 10.1093/glycob/cww136.

DOI:10.1093/glycob/cww136
PMID:28096310
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5441919/
Abstract

The Gram-negative bacterium Campylobacter jejuni 81116 (Penner serotype HS:6) has a class E lipooligosaccharide (LOS) biosynthesis locus containing 19 genes, which encode for 11 putative glycosyltransferases, 1 lipid A acyltransferase and 7 enzymes thought to be involved in the biosynthesis of dideoxyhexosamine (ddHexN) moieties. Although the LOS outer core structure of C. jejuni 81116 is still unknown, recent mass spectrometry analyses suggest that it contains acetylated forms of two ddHexN residues. For this investigation, five of the genes encoding enzymes reportedly involved in the biosyntheses of these sugar residues were examined, rmlA, rmlB, wlaRA, wlaRB and wlaRG. Specifically, these genes were cloned and expressed in Escherichia coli, and the corresponding enzymes were purified and tested for biochemical activity. Here we present data demonstrating that RmlA functions as a glucose-1-phosphate thymidylyltransferase and that RmlB is a thymidine diphosphate (dTDP)-glucose 4,6-dehydratase. We also show, through nuclear magnetic resonance spectroscopy and mass spectrometry analyses, that WlaRG, when utilized in coupled assays with either WlaRA or WlaRB and dTDP-4-keto-6-deoxyglucose, results in the production of either dTDP-3-amino-3,6-dideoxy-d-galactose (dTDP-Fuc3N) or dTDP-3-amino-3,6-dideoxy-d-glucose (dTDP-Qui3N), respectively. In addition, the X-ray crystallographic structures of the 3,4-ketoisomerases, WlaRA and WlaRB, were determined to 2.14 and 2.0 Å resolutions, respectively. Taken together, the data reported herein demonstrate that C. jejuni 81116 utilizes five enzymes to synthesize dTDP-Fuc3N or dTDP-Qui3N and that WlaRG, an aminotransferase, can function on sugars with differing stereochemistry about their C-4' carbons. Importantly, the data reveal that C. jejuni 81116 has the ability to synthesize two isomeric ddHexN forms.

摘要

革兰氏阴性菌空肠弯曲菌81116(彭纳血清型HS:6)具有一个E类脂寡糖(LOS)生物合成基因座,包含19个基因,这些基因编码11种假定的糖基转移酶、1种脂多糖A酰基转移酶以及7种被认为参与二脱氧己糖胺(ddHexN)部分生物合成的酶。尽管空肠弯曲菌81116的LOS外核结构仍不清楚,但最近的质谱分析表明,它含有两种ddHexN残基的乙酰化形式。在本研究中,检测了据报道参与这些糖残基生物合成的5个酶编码基因,即rmlA、rmlB、wlaRA、wlaRB和wlaRG。具体而言,将这些基因克隆并在大肠杆菌中表达,纯化相应的酶并测试其生化活性。在此,我们展示的数据表明,RmlA作为葡萄糖-1-磷酸胸苷酰转移酶发挥作用,而RmlB是胸苷二磷酸(dTDP)-葡萄糖4,6-脱水酶。我们还通过核磁共振光谱和质谱分析表明,当WlaRG与WlaRA或WlaRB以及dTDP-4-酮-6-脱氧葡萄糖进行偶联测定时,分别产生dTDP-3-氨基-3,6-二脱氧-D-半乳糖(dTDP-Fuc3N)或dTDP-3-氨基-3,6-二脱氧-D-葡萄糖(dTDP-Qui3N)。此外,3,4-酮异构酶WlaRA和WlaRB的X射线晶体结构分别确定为2.14 Å和2.0 Å分辨率。综上所述,本文报道的数据表明,空肠弯曲菌81116利用五种酶合成dTDP-Fuc3N或dTDP-Qui3N,并且氨基转移酶WlaRG可以作用于其C-4'碳具有不同立体化学的糖。重要的是,数据显示空肠弯曲菌81116有能力合成两种异构的ddHexN形式。

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本文引用的文献

1
Bacterial Sugar 3,4-Ketoisomerases: Structural Insight into Product Stereochemistry.细菌糖3,4-酮异构酶:产物立体化学的结构洞察
Biochemistry. 2015 Jul 28;54(29):4495-506. doi: 10.1021/acs.biochem.5b00541. Epub 2015 Jul 13.
2
The molecular architecture of QdtA, a sugar 3,4-ketoisomerase from Thermoanaerobacterium thermosaccharolyticum.来自嗜热栖热放线菌的糖3,4-酮异构酶QdtA的分子结构。
Protein Sci. 2014 Jun;23(6):683-92. doi: 10.1002/pro.2451. Epub 2014 Mar 25.
3
Structure of a sugar N-formyltransferase from Campylobacter jejuni.空肠弯曲菌糖基 N-(formyl)转移酶的结构。
Biochemistry. 2013 Sep 3;52(35):6114-26. doi: 10.1021/bi4009006. Epub 2013 Aug 20.
4
Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species.比较分析大肠弯曲菌、空肠弯曲菌亚种空肠亚种和相关弯曲菌属种的毒力基因簇(脂寡糖 [LOS] 和荚膜多糖 [CPS])的特征。
Infect Genet Evol. 2013 Mar;14:200-13. doi: 10.1016/j.meegid.2012.12.010. Epub 2012 Dec 29.
5
Allosteric competitive inhibitors of the glucose-1-phosphate thymidylyltransferase (RmlA) from Pseudomonas aeruginosa.铜绿假单胞菌葡萄糖-1-磷酸胸苷酰转移酶(RmlA)的变构竞争性抑制剂。
ACS Chem Biol. 2013 Feb 15;8(2):387-96. doi: 10.1021/cb300426u. Epub 2012 Nov 28.
6
The role of WlaRG, WlaTB and WlaTC in lipooligosaccharide synthesis by Campylobacter jejuni strain 81116.空肠弯曲菌 81116 株中 WlaRG、WlaTB 和 WlaTC 在脂寡糖合成中的作用。
Microb Pathog. 2012 Jun;52(6):344-52. doi: 10.1016/j.micpath.2012.03.004. Epub 2012 Mar 15.
7
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J Biomol Screen. 2012 Feb;17(2):252-7. doi: 10.1177/1087057111421373. Epub 2011 Sep 22.
8
Combined structural and functional investigation of a C-3''-ketoreductase involved in the biosynthesis of dTDP-L-digitoxose.C-3''-酮还原酶参与 dTDP-L-毛地黄糖生物合成的结构与功能联合研究。
Biochemistry. 2011 Jul 5;50(26):5905-17. doi: 10.1021/bi200514b. Epub 2011 Jun 8.
9
Phaser crystallographic software.相位结晶学软件。
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
10
Structural analysis of QdtB, an aminotransferase required for the biosynthesis of dTDP-3-acetamido-3,6-dideoxy-alpha-D-glucose.QdtB的结构分析,QdtB是dTDP-3-乙酰氨基-3,6-二脱氧-α-D-葡萄糖生物合成所需的一种转氨酶。
Biochemistry. 2009 Feb 24;48(7):1553-61. doi: 10.1021/bi8022015.